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GRange
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
5.9 years ago
mawusse.agbessi
• 0
2
votes
0
replies
1.2k
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
6.3 years ago
rmash
▴ 20
0
votes
1
reply
947
views
Multi-sample Heatmap from GRange
GRange
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
Danny
• 0
0
votes
3
replies
3.5k
views
Selecting columns form a list of grange objects
r
granges
grange
7.4 years ago
g.k
• 0
1
vote
3
replies
1.5k
views
GRange and bam files
bioconductor
Grange
7.8 years ago
Merlin
▴ 10
0
votes
1
reply
1.3k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
7.8 years ago
g.k
• 0
1
vote
2
replies
2.4k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
g.k
• 0
3
votes
4
replies
6.4k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
endrebak85
▴ 40
1
vote
2
replies
3.0k
views
Extract GRanges for gene data frame
GRange
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
mdeea123
▴ 10
9
votes
21
replies
14k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 10.1 years ago by
Ou, Jianhong
★ 1.3k • written 10.1 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.4k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 11.0 years ago by
Valerie Obenchain
★ 6.8k • written 11.0 years ago by
cidster12
• 0
4
votes
2
replies
1.6k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
11.2 years ago
Bogdan
▴ 670
12 results • Page
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Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Answer: Bulk RNAseq analysis for
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James W. MacDonald
68k
In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
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Answer: Limma-voom sample weights and impact on DEG numbers
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