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software error Grange RangedData

4.1 years ago mawusse.agbessi • 0

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GenomicRanges GenomicFeatures grange distanceToNearest R

4.5 years ago rmash ▴ 20

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GRange

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by Danny • 0

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r granges grange

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bioconductor Grange

6.0 years ago • updated 5.9 years ago Merlin ▴ 10

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R genomicranges granges grange

6.0 years ago g.k • 0

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r grange granges iranges

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GRange genomicranges

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GRange

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GRange genomicranges genomicfeatures

updated 8.3 years ago by Ou, Jianhong ★ 1.3k • written 8.3 years ago by tangming2005 ▴ 190

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GenomicFeatures GRange Rsamtools

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.2 years ago by cidster12 • 0

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Grange

9.4 years ago Bogdan ▴ 670

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k