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7
votes
2
replies
1.4k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.2 years ago by ▴ 60
0
votes
0
replies
776
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel seed
2.4 years ago ZheFrench ▴ 60
2
votes
0
replies
3.2k
views
Comment: Comment: biomaRt : No lock file for BiocFileCache
updated 2.6 years ago by 25k • written 2.6 years ago by ▴ 60
0
votes
0
replies
3.2k
views
Comment: Comment: biomaRt : No lock file for BiocFileCache
2.6 years ago ZheFrench ▴ 60
0
votes
1
reply
3.2k
views
Comment: Comment: biomaRt : No lock file for BiocFileCache
2.6 years ago ZheFrench ▴ 60
0
votes
0
replies
3.2k
views
Comment: Comment: biomaRt : No lock file for BiocFileCache
2.6 years ago ZheFrench ▴ 60
2
votes
8
replies
3.2k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache biomaRt
updated 2.6 years ago by 25k • written 2.6 years ago by ▴ 60
2
votes
3
replies
2.1k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 6 months ago by • 0 • written 4.2 years ago by ▴ 60
0
votes
1
reply
2.5k
views
Comment: C: ATACseqQC memory overflow issue
6.2 years ago ZheFrench ▴ 60
0
votes
0
replies
1.3k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.8 years ago ZheFrench ▴ 60
2
votes
3
replies
1.5k
views
DEXSeqHTML and biomart object
DEXSeq
updated 7.0 years ago by ★ 1.9k • written 7.0 years ago by ▴ 60
0
votes
0
replies
848
views
DEXSeq : Preprocessing within R for Forward-Reverse Library
DEXSeq
7.0 years ago ZheFrench ▴ 60
0
votes
1
reply
819
views
diffbind : Is it possible to analyze one sample only ?
diffbind
updated 7.2 years ago by ★ 5.2k • written 7.2 years ago by ▴ 60
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 7.2 years ago by ★ 5.2k • written 7.3 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Diffbind: Does Heatmap use count or score? and for which intervals ?
diffbind
updated 7.2 years ago by ★ 5.2k • written 7.5 years ago by ▴ 60
0
votes
1
reply
4.4k
views
Comment: C: clusterProfiler: Which GO version is used behind ?
7.2 years ago ZheFrench ▴ 60
4
votes
3
replies
4.4k
views
clusterProfiler: Which GO version is used behind ?
clusterProfiler
updated 7.2 years ago by ★ 4.1k • written 7.2 years ago by ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: Diffbind: dba.plot retrieve variance explained
7.2 years ago ZheFrench ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: ChIPQC : ChIPQCreport(dba_object) getting error when drawing plotFribl
7.4 years ago ZheFrench ▴ 60
1
vote
3
replies
1.4k
views
ChIPQC : ChIPQCreport(dba_object) getting error when drawing plotFribl
ChIPQC
7.4 years ago ZheFrench ▴ 60
0
votes
1
reply
1.1k
views
Comment: C: Diffbind: retrieve raw peaks per sample
7.5 years ago ZheFrench ▴ 60
0
votes
3
replies
1.1k
views
Diffbind: retrieve raw peaks per sample
diffbind
updated 7.5 years ago by ★ 5.2k • written 7.5 years ago by ▴ 60
0
votes
1
reply
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
1
reply
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
2
replies
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
1
reply
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
5
votes
17
replies
2.2k
views
DiffBind : More fragment sizes than libraries
diffbind
updated 7.5 years ago by ★ 5.2k • written 7.5 years ago by ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
1
reply
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
2
replies
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.5 years ago ZheFrench ▴ 60
0
votes
1
reply
1.9k
views
Comment: C: ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is I
7.5 years ago ZheFrench ▴ 60
0
votes
4
replies
1.9k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC ChIPQCreport
updated 7.5 years ago by ▴ 420 • written 7.5 years ago by ▴ 60
4
votes
2
replies
1.5k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 7.5 years ago by ▴ 420 • written 7.5 years ago by ▴ 60
0
votes
1
reply
861
views
Comment: C: DESEQ2 : Analysing PolyA+ & Ribo0 RNASEQ together with batch effect per year
7.5 years ago ZheFrench ▴ 60
1
vote
0
replies
1.5k
views
Answer: C: ChIPQC : ChIPQCreport(experiment) swap memory overload
7.5 years ago ZheFrench ▴ 60
0
votes
1
reply
861
views
Comment: C: DESEQ2 : Analysing PolyA+ & Ribo0 RNASEQ together with batch effect per year
7.5 years ago ZheFrench ▴ 60
2
votes
6
replies
861
views
DESEQ2 : Analysing PolyA+ & Ribo0 RNASEQ together with batch effect per year
deseq2
updated 7.5 years ago by 43k • written 7.5 years ago by ▴ 60
0
votes
1
reply
5.3k
views
Comment: C: diffbind and macs2 output
7.5 years ago ZheFrench ▴ 60
0
votes
1
reply
858
views
DESEQ2: Is variance dependend of the mean in my experiments ? What can I conclude from this meanSdPlot.
deseq2
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 60
0
votes
0
replies
5.4k
views
Comment: C: clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is t
8.1 years ago ZheFrench ▴ 60
1
vote
2
replies
5.4k
views
clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is this like an FDR ?
clusterprofiler qvalue
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 60
1
vote
1
reply
741
views
DESEQ2: high number of differentially expressed genes with very high fold change
deseq2
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 60
2
votes
1
reply
1.4k
views
DESEQ2 : When we merge technical replicates raw reads, do we need to divide by the number of technical replicates ?
deseq2
updated 8.1 years ago by ★ 3.8k • written 8.1 years ago by ▴ 60
0
votes
0
replies
3.1k
views
Comment: C: DESEQ2: Can we analyse pair of technical replicates as biological replicates to
8.1 years ago ZheFrench ▴ 60
1
vote
3
replies
3.1k
views
DESEQ2: Can we analyse pair of technical replicates as biological replicates to get p-values ? What will be the effect ?
deseq2
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 60
0
votes
1
reply
2.9k
views
Comment: C: Which formula should I use to set the best model matrix for my analysis ?
8.1 years ago ZheFrench ▴ 60
0
votes
1
reply
2.9k
views
Comment: C: Which formula should I use to set the best model matrix for my analysis ?
8.1 years ago ZheFrench ▴ 60
0
votes
0
replies
2.9k
views
Comment: C: Which formula should I use to set the best model matrix for my analysis ?
8.1 years ago ZheFrench ▴ 60
53 results • Page 1 of 2
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