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BiocCheck
•
reset
7
votes
2
replies
1.1k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.5 years ago by
ZheFrench
▴ 40
5
votes
2
replies
907
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.3 years ago by
Steve Lianoglou
★ 13k • written 2.3 years ago by
pouryany
• 0
0
votes
2
replies
886
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
2.8 years ago
ullrich
▴ 20
0
votes
2
replies
667
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 2.9 years ago by
shepherl
3.8k • written 2.9 years ago by
wewolski
▴ 10
0
votes
2
replies
1.4k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.3 years ago
Hector
• 0
0
votes
1
reply
820
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
zhezhenwang
• 0
1
vote
2
replies
1.8k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.6 years ago
j.flesch
▴ 10
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.8 years ago
waterincan
• 0
0
votes
2
replies
874
views
BiocCheck package size
BiocCheck
updated 4.9 years ago by
Hervé Pagès
16k • written 4.9 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
4.2k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.7 years ago by
shepherl
3.8k • written 5.7 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.7 years ago by
Marcel Ramos
680 • written 7.8 years ago by
richierocks
▴ 40
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.4 years ago
Paul Brennan
▴ 10
6
votes
3
replies
2.5k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.4 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.4 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.2k
views
BiocCheck path escape issue
bioccheck
bug
6.9 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
856
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
ihnatova
• 0
2
votes
10
replies
2.3k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 17 months ago by
Marek Gierlinski
▴ 30 • written 7.4 years ago by
david.a.quigley
• 0
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
7.9 years ago
kmezhoud
▴ 10
1
vote
3
replies
1.7k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.1 years ago by
Dan Tenenbaum
★ 8.2k • written 8.1 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
ulna
• 0
[@ilayahari][1][basketball stars][2] The complete version of GEOmetadb cannot be downloaded, even though the demo file works. [1]: http…
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
If you include `0+` in the model formula, then the order of the batch and treatment factors in the model becomes important. You need `0+gro…
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
James W. MacDonald
65k
The main goal here is to map human gene symbols to something else, which you can use the `Orthology.eg.db` package to do. You could also us…
Comment: How can I compute AIC for MAST hurdle model fitted in the whole dataset?
by
rproendo
▴ 20
Hi OP, checking in to see if you found a solution to this issue. I'm also interested in using AICs to evaluate model fits in MAST.
Comment: padj-based gradient scale from barplot (clusterProfiler results) does not work p
by
Eva
▴ 10
Oh god, it is right, how I didn't realise before. I got confused with the scientific format of the numbers and I was in a loop for nothing.…
Votes
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
DESeq2 design with multiple factors
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Wolfgang RAFFELSBERGER
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Hervé Pagès
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