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BiocCheck
•
reset
7
votes
2
replies
1.5k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.3 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.2 years ago by
Steve Lianoglou
★ 13k • written 3.2 years ago by
pouryany
• 0
0
votes
2
replies
1.1k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.7 years ago • updated 3.6 years ago
ullrich
▴ 20
0
votes
2
replies
873
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.8 years ago by
shepherl
4.1k • written 3.8 years ago by
wewolski
▴ 10
0
votes
2
replies
1.7k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.1 years ago
Hector
• 0
0
votes
1
reply
1.1k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.4 years ago by
James W. MacDonald
67k • written 5.4 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.3k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.5 years ago
j.flesch
▴ 10
0
votes
12
replies
1.4k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.6 years ago
waterincan
• 0
0
votes
2
replies
1.1k
views
BiocCheck package size
BiocCheck
updated 5.8 years ago by
Hervé Pagès
16k • written 5.8 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.0k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.6 years ago by
shepherl
4.1k • written 6.6 years ago by
xyluo1991
• 0
2
votes
5
replies
2.2k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.6 years ago by
Marcel Ramos
700 • written 8.7 years ago by
richierocks
▴ 40
0
votes
1
reply
1.6k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.2 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.0k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.2 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
7.8 years ago • updated 7.7 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.0k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
ihnatova
• 0
3
votes
10
replies
3.0k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.3 years ago by
Marek Gierlinski
▴ 30 • written 8.2 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.8 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.1k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: Rain error: invalid annotation of time points
by
Dominik
• 0
Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…
Answer: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Guido Hooiveld
★ 4.1k
Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…
Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza
by
mec25
• 0
I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
Quang NN
▴ 10
Thank you so much for taking time to provide this clarification!
Comment: How can I generate a heatmap and clustering of differentially expressed genes in
by
Renuka
• 0
Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this
Votes
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
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