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444
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Comment: Comment: Different Shrunk Log2FC according with reference
7 months ago andrebolerbarros ▴ 20
1
vote
3
replies
444
views
Different Shrunk Log2FC according with reference
DESeq2
updated 7 months ago by 43k • written 7 months ago by ▴ 20
0
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1
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412
views
Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
7 months ago andrebolerbarros ▴ 20
0
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3
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412
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Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 7 months ago by 43k • written 7 months ago by ▴ 20
0
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1
reply
518
views
Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
8 months ago andrebolerbarros ▴ 20
2
votes
3
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518
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 8 months ago by 43k • written 8 months ago by ▴ 20
0
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0
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645
views
Comment: Comment: Biomart - upstream region of 'coding'
14 months ago andrebolerbarros ▴ 20
0
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2
replies
645
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Biomart - upstream region of 'coding'
biomaRt
updated 14 months ago by ★ 6.6k • written 14 months ago by ▴ 20
0
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1
reply
728
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Comment: Comment: p-value<0.05 for a gene with zero counts?
16 months ago andrebolerbarros ▴ 20
0
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3
replies
728
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 16 months ago by 43k • written 16 months ago by ▴ 20
0
votes
3
replies
1.1k
views
DESeq2 with nbinomGLM issues
DESeq2
updated 17 months ago by 43k • written 17 months ago by ▴ 20
0
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0
replies
1.1k
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Comment: Comment: DESeq2 with nbinomGLM issues
17 months ago andrebolerbarros ▴ 20
0
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0
replies
1.1k
views
Comment: Comment: DESEq2 Error: rows did not converge
17 months ago andrebolerbarros ▴ 20
0
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1
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1.1k
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Comment: Comment: DESEq2 Error: rows did not converge
17 months ago andrebolerbarros ▴ 20
0
votes
4
replies
1.1k
views
DESEq2 Error: rows did not converge
DESeq2
17 months ago andrebolerbarros ▴ 20
1
vote
1
reply
763
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 21 months ago by ★ 4.5k • written 21 months ago by ▴ 20
0
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0
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1.1k
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Comment: Comment: PCA subset of genes vs DE
21 months ago andrebolerbarros ▴ 20
0
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2
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1.1k
views
PCA subset of genes vs DE
DESeq2 RNASeq
21 months ago andrebolerbarros ▴ 20
2
votes
1
reply
817
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 2.3 years ago by ★ 4.5k • written 2.3 years ago by ▴ 20
0
votes
1
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2.7k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.5 years ago andrebolerbarros ▴ 20
3
votes
9
replies
2.7k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 23 months ago by • 0 • written 2.5 years ago by ▴ 20
0
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0
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2.7k
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Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.5 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.7k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.5 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.9k
views
Comment: Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
3.8 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.1k
views
Comment: C: Java & DESeq2
4.6 years ago andrebolerbarros ▴ 20
0
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1
reply
1.1k
views
Comment: C: Java & DESeq2
4.6 years ago andrebolerbarros ▴ 20
0
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0
replies
1.1k
views
Comment: C: Java & DESeq2
4.6 years ago andrebolerbarros ▴ 20
0
votes
2
replies
1.1k
views
Comment: C: Java & DESeq2
4.6 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.1k
views
Comment: C: Java & DESeq2
4.6 years ago andrebolerbarros ▴ 20
0
votes
10
replies
1.1k
views
Java & DESeq2
deseq2
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 20
0
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1
reply
27k
views
Comment: C: z-score with DESeq2?
5.3 years ago andrebolerbarros ▴ 20
0
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0
replies
780
views
Comment: C: estimateSizeFactors after subsetting?
5.4 years ago andrebolerbarros ▴ 20
1
vote
3
replies
780
views
estimateSizeFactors after subsetting?
deseq2
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 20
1
vote
3
replies
27k
views
z-score with DESeq2?
deseq2
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
0
votes
1
reply
1.9k
views
Comment: C: Using vegan::betadisper for determing if I subset my design for DESeq2
5.6 years ago andrebolerbarros ▴ 20
3
votes
5
replies
1.9k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 3.8 years ago by ▴ 260 • written 5.6 years ago by ▴ 20
0
votes
1
reply
1.9k
views
Comment: C: DESeq2 for QuantSeq data
5.7 years ago andrebolerbarros ▴ 20
1
vote
3
replies
1.9k
views
DESeq2 for QuantSeq data
deseq2
updated 5.7 years ago by ▴ 20 • written 5.7 years ago by ▴ 20
0
votes
1
reply
799
views
When should I use betaprior=T
deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 20
6
votes
8
replies
3.3k
views
alpha in lfcshrink?
deseq2
updated 3.6 years ago by ▴ 80 • written 6.0 years ago by ▴ 20
0
votes
1
reply
890
views
Comment: C: Pre-filtering results influence on downstream analysis
6.0 years ago andrebolerbarros ▴ 20
0
votes
3
replies
890
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: Import_biom with tree problem
6.1 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.8k
views
Import_biom with tree problem
phyloseq mothur 16s
6.1 years ago andrebolerbarros ▴ 20
0
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0
replies
4.0k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.3 years ago andrebolerbarros ▴ 20
0
votes
2
replies
4.0k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.3 years ago andrebolerbarros ▴ 20
0
votes
1
reply
4.0k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.3 years ago andrebolerbarros ▴ 20
0
votes
1
reply
4.0k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.3 years ago andrebolerbarros ▴ 20
2
votes
10
replies
4.0k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 13 months ago by 43k • written 6.3 years ago by ▴ 20
0
votes
0
replies
1.7k
views
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
6.3 years ago andrebolerbarros ▴ 20
58 results • Page 1 of 2
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