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0
votes
1
reply
249
views
Comment: Comment: Different Shrunk Log2FC according with reference
4 weeks ago andrebolerbarros ▴ 20
1
vote
3
replies
249
views
Different Shrunk Log2FC according with reference
DESeq2
updated 4 weeks ago by 42k • written 4 weeks ago by ▴ 20
0
votes
1
reply
238
views
Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
6 weeks ago andrebolerbarros ▴ 20
0
votes
3
replies
238
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 5 weeks ago by 42k • written 6 weeks ago by ▴ 20
0
votes
1
reply
326
views
Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
9 weeks ago andrebolerbarros ▴ 20
2
votes
3
replies
326
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 9 weeks ago by 42k • written 10 weeks ago by ▴ 20
0
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0
replies
394
views
Comment: Comment: Biomart - upstream region of 'coding'
8 months ago andrebolerbarros ▴ 20
0
votes
2
replies
394
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Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
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1
reply
567
views
Comment: Comment: p-value<0.05 for a gene with zero counts?
10 months ago andrebolerbarros ▴ 20
0
votes
3
replies
567
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 10 months ago by 42k • written 10 months ago by ▴ 20
0
votes
3
replies
809
views
DESeq2 with nbinomGLM issues
DESeq2
updated 11 months ago by 42k • written 11 months ago by ▴ 20
0
votes
0
replies
809
views
Comment: Comment: DESeq2 with nbinomGLM issues
11 months ago andrebolerbarros ▴ 20
0
votes
0
replies
844
views
Comment: Comment: DESEq2 Error: rows did not converge
11 months ago andrebolerbarros ▴ 20
0
votes
1
reply
844
views
Comment: Comment: DESEq2 Error: rows did not converge
11 months ago andrebolerbarros ▴ 20
0
votes
4
replies
844
views
DESEq2 Error: rows did not converge
DESeq2
11 months ago andrebolerbarros ▴ 20
1
vote
1
reply
563
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 15 months ago by ★ 4.2k • written 15 months ago by ▴ 20
0
votes
0
replies
877
views
Comment: Comment: PCA subset of genes vs DE
15 months ago andrebolerbarros ▴ 20
0
votes
2
replies
877
views
PCA subset of genes vs DE
DESeq2 RNASeq
15 months ago andrebolerbarros ▴ 20
2
votes
1
reply
694
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 22 months ago by ★ 4.2k • written 22 months ago by ▴ 20
0
votes
1
reply
2.3k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.0 years ago andrebolerbarros ▴ 20
3
votes
9
replies
2.3k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 17 months ago by • 0 • written 2.0 years ago by ▴ 20
0
votes
0
replies
2.3k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.3k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.7k
views
Comment: Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
3.3 years ago andrebolerbarros ▴ 20
0
votes
1
reply
950
views
Comment: C: Java & DESeq2
4.1 years ago andrebolerbarros ▴ 20
0
votes
1
reply
950
views
Comment: C: Java & DESeq2
4.1 years ago andrebolerbarros ▴ 20
0
votes
0
replies
950
views
Comment: C: Java & DESeq2
4.1 years ago andrebolerbarros ▴ 20
0
votes
2
replies
950
views
Comment: C: Java & DESeq2
4.1 years ago andrebolerbarros ▴ 20
0
votes
1
reply
950
views
Comment: C: Java & DESeq2
4.1 years ago andrebolerbarros ▴ 20
0
votes
10
replies
950
views
Java & DESeq2
deseq2
updated 4.1 years ago by 42k • written 4.1 years ago by ▴ 20
0
votes
1
reply
25k
views
Comment: C: z-score with DESeq2?
4.8 years ago andrebolerbarros ▴ 20
0
votes
0
replies
658
views
Comment: C: estimateSizeFactors after subsetting?
4.9 years ago andrebolerbarros ▴ 20
1
vote
3
replies
658
views
estimateSizeFactors after subsetting?
deseq2
updated 4.9 years ago by 42k • written 4.9 years ago by ▴ 20
1
vote
3
replies
25k
views
z-score with DESeq2?
deseq2
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Comment: C: Using vegan::betadisper for determing if I subset my design for DESeq2
5.1 years ago andrebolerbarros ▴ 20
3
votes
5
replies
1.7k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 3.3 years ago by ▴ 250 • written 5.1 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Comment: C: DESeq2 for QuantSeq data
5.2 years ago andrebolerbarros ▴ 20
1
vote
3
replies
1.6k
views
DESeq2 for QuantSeq data
deseq2
updated 5.2 years ago by ▴ 20 • written 5.2 years ago by ▴ 20
0
votes
1
reply
680
views
When should I use betaprior=T
deseq2
updated 5.5 years ago by 42k • written 5.5 years ago by ▴ 20
6
votes
8
replies
2.8k
views
alpha in lfcshrink?
deseq2
updated 3.1 years ago by ▴ 80 • written 5.5 years ago by ▴ 20
0
votes
1
reply
771
views
Comment: C: Pre-filtering results influence on downstream analysis
5.5 years ago andrebolerbarros ▴ 20
0
votes
3
replies
771
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 5.5 years ago by 42k • written 5.5 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: Import_biom with tree problem
5.6 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.6k
views
Import_biom with tree problem
phyloseq mothur 16s
5.6 years ago andrebolerbarros ▴ 20
0
votes
0
replies
3.3k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.8 years ago andrebolerbarros ▴ 20
0
votes
2
replies
3.3k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.8 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.3k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.8 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.3k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.8 years ago andrebolerbarros ▴ 20
2
votes
10
replies
3.3k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 7 months ago by 42k • written 5.8 years ago by ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
5.8 years ago andrebolerbarros ▴ 20
58 results • Page 1 of 2
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