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Comment: Comment: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
5 months ago Lucy ▴ 60
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0
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1.3k
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Comment: Comment: ComplexHeatmap - alter legend position
5 months ago Lucy ▴ 60
1
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5
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1.3k
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ComplexHeatmap - alter legend position
ComplexHeatmap
6 months ago • updated 5 months ago Lucy ▴ 60
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0
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1.3k
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Comment: Comment: ComplexHeatmap - alter legend position
6 months ago Lucy ▴ 60
0
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1
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1.5k
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Comment: Comment: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
6 months ago Lucy ▴ 60
1
vote
4
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1.5k
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Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA GSVAdata RNAseq
6 months ago • updated 5 months ago Lucy ▴ 60
0
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2
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973
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Comment: Comment: GSVA on separate healthy and disease datasets
9 months ago Lucy ▴ 60
0
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0
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973
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Comment: Comment: GSVA on separate healthy and disease datasets
9 months ago Lucy ▴ 60
1
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6
replies
973
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GSVA on separate healthy and disease datasets
GSVA
updated 9 months ago by 67k • written 9 months ago by ▴ 60
0
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0
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913
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
9 months ago Lucy ▴ 60
0
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1
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913
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
9 months ago Lucy ▴ 60
0
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4
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913
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Adjust RNA-seq counts (more than one batch variable) for plotting differentially expressed genes
ComBat sva edgeR
9 months ago Lucy ▴ 60
0
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0
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1.1k
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Comment: Comment: Help with model for differential expression analysis
11 months ago Lucy ▴ 60
0
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2
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1.1k
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Comment: Comment: Help with model for differential expression analysis
12 months ago Lucy ▴ 60
0
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1
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1.1k
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Comment: Comment: Help with model for differential expression analysis
12 months ago Lucy ▴ 60
0
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5
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1.1k
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Help with model for differential expression analysis
DifferentialExpression edgeR
12 months ago • updated 11 months ago Lucy ▴ 60
0
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0
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1.3k
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
17 months ago Lucy ▴ 60
2
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3
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1.3k
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Applicability of AUCell to bulk RNA-seq
AUCell AUcell
17 months ago Lucy ▴ 60
3
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1
reply
710
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Should I set a seed prior to running AUCell?
AUCell
updated 2.2 years ago by ★ 4.6k • written 2.2 years ago by ▴ 60
1
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0
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2.3k
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Comment: Comment: Subread installation
2.8 years ago Lucy ▴ 60
0
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1
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2.3k
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Comment: Comment: Subread installation
2.8 years ago Lucy ▴ 60
1
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4
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2.3k
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Subread installation
subread featureCounts
2.8 years ago Lucy ▴ 60
0
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0
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2.7k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.9 years ago Lucy ▴ 60
0
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1
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2.7k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.9 years ago Lucy ▴ 60
1
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5
replies
2.7k
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featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
subread Rsubread featureCounts RNA-seq
2.9 years ago Lucy ▴ 60
0
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0
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2.7k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.9 years ago Lucy ▴ 60
0
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1
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3.4k
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Comment: Comment: Negative binomial fitting DESeq2
3.6 years ago Lucy ▴ 60
0
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1
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3.4k
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Comment: Comment: Negative binomial fitting DESeq2
3.6 years ago Lucy ▴ 60
3
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5
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3.4k
views
Negative binomial fitting DESeq2
DESeq2 RNA-seq
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 60
3
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1
reply
2.5k
views
Is it always preferable to recount library sizes of DGEList object in edgeR after filtering?
edgeR RnaSeqSampleSizeData RNAseq
updated 12 months ago by 52k • written 3.7 years ago by ▴ 60
1
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21
replies
5.9k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.7 years ago by ▴ 60
0
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1
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2.7k
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Comment: C: EdgeR full model vs. reduced model - p-value for covariate
4.5 years ago Lucy ▴ 60
5
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10
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2.7k
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EdgeR full model vs. reduced model - p-value for covariate
EdgeR differential expression analysis covariates
updated 4.5 years ago by 52k • written 4.5 years ago by ▴ 60
0
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0
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2.7k
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Comment: C: EdgeR full model vs. reduced model - p-value for covariate
4.5 years ago Lucy ▴ 60
0
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1
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2.7k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
4.5 years ago Lucy ▴ 60
0
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1
reply
2.7k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
4.5 years ago Lucy ▴ 60
0
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0
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1.0k
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Comment: C: EdgeR blocking factor - missing paired sample
4.5 years ago Lucy ▴ 60
1
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2
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1.0k
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EdgeR blocking factor - missing paired sample
EdgeR edgeR RNA-seq differential expression analysis blocking factors
updated 4.5 years ago by 52k • written 4.6 years ago by ▴ 60
0
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0
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5.9k
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Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
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1
reply
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
votes
1
reply
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
votes
1
reply
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
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2
replies
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
votes
1
reply
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
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0
replies
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
votes
1
reply
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.7 years ago Lucy ▴ 60
0
votes
1
reply
5.9k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 60
0
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0
replies
1.2k
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Comment: C: DEsingle differential-expression analysis
4.8 years ago Lucy ▴ 60
2
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4
replies
1.2k
views
DEsingle differential-expression analysis
DEsingle RNA-seq differential-expression analysis
updated 4.8 years ago by ▴ 10 • written 5.1 years ago by ▴ 60
0
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0
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1.4k
views
Comment: C: bioMart error - The query to the BioMart webservice returned an invalid result:
5.5 years ago Lucy ▴ 60
60 results • Page 1 of 2
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