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Comment: Comment: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
18 months ago Lucy ▴ 60
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0
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3.8k
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Comment: Comment: ComplexHeatmap - alter legend position
18 months ago Lucy ▴ 60
1
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5
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3.8k
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ComplexHeatmap - alter legend position
ComplexHeatmap
19 months ago • updated 18 months ago Lucy ▴ 60
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3.8k
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Comment: Comment: ComplexHeatmap - alter legend position
19 months ago Lucy ▴ 60
0
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1
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3.0k
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Comment: Comment: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
19 months ago Lucy ▴ 60
1
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4
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3.0k
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Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA GSVAdata RNAseq
19 months ago • updated 18 months ago Lucy ▴ 60
0
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2
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1.6k
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Comment: Comment: GSVA on separate healthy and disease datasets
22 months ago Lucy ▴ 60
0
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0
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1.6k
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Comment: Comment: GSVA on separate healthy and disease datasets
22 months ago Lucy ▴ 60
1
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6
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1.6k
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GSVA on separate healthy and disease datasets
GSVA
updated 22 months ago by 68k • written 22 months ago by ▴ 60
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0
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1.6k
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
22 months ago Lucy ▴ 60
0
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1
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1.6k
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
22 months ago Lucy ▴ 60
0
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4
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1.6k
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Adjust RNA-seq counts (more than one batch variable) for plotting differentially expressed genes
ComBat sva edgeR
22 months ago Lucy ▴ 60
0
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0
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1.5k
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Comment: Comment: Help with model for differential expression analysis
2.0 years ago Lucy ▴ 60
0
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2
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1.5k
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Comment: Comment: Help with model for differential expression analysis
2.1 years ago Lucy ▴ 60
0
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1
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1.5k
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Comment: Comment: Help with model for differential expression analysis
2.1 years ago Lucy ▴ 60
0
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5
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1.5k
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Help with model for differential expression analysis
DifferentialExpression edgeR
2.1 years ago • updated 2.0 years ago Lucy ▴ 60
0
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0
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2.0k
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
2.5 years ago Lucy ▴ 60
2
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3
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2.0k
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Applicability of AUCell to bulk RNA-seq
AUCell AUcell
2.5 years ago Lucy ▴ 60
3
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1
reply
1.3k
views
Should I set a seed prior to running AUCell?
AUCell
updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by ▴ 60
1
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0
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3.1k
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Comment: Comment: Subread installation
3.8 years ago Lucy ▴ 60
0
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1
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3.1k
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Comment: Comment: Subread installation
3.8 years ago Lucy ▴ 60
1
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4
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3.1k
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Subread installation
subread featureCounts
3.8 years ago Lucy ▴ 60
0
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0
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3.6k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
4.0 years ago Lucy ▴ 60
0
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1
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3.6k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
4.0 years ago Lucy ▴ 60
1
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5
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3.6k
views
featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
subread Rsubread featureCounts RNA-seq
4.0 years ago Lucy ▴ 60
0
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0
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3.6k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
4.0 years ago Lucy ▴ 60
0
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1
reply
5.1k
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Comment: Comment: Negative binomial fitting DESeq2
4.7 years ago Lucy ▴ 60
0
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1
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5.1k
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Comment: Comment: Negative binomial fitting DESeq2
4.7 years ago Lucy ▴ 60
3
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5
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5.1k
views
Negative binomial fitting DESeq2
DESeq2 RNA-seq
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 60
4
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1
reply
3.9k
views
Is it always preferable to recount library sizes of DGEList object in edgeR after filtering?
edgeR RnaSeqSampleSizeData RNAseq
updated 2.1 years ago by 53k • written 4.8 years ago by ▴ 60
1
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21
replies
7.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 5.7 years ago by ▴ 60
0
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1
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3.5k
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Comment: C: EdgeR full model vs. reduced model - p-value for covariate
5.6 years ago Lucy ▴ 60
5
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10
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3.5k
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EdgeR full model vs. reduced model - p-value for covariate
EdgeR differential expression analysis covariates
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
0
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0
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3.5k
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Comment: C: EdgeR full model vs. reduced model - p-value for covariate
5.6 years ago Lucy ▴ 60
0
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1
reply
3.5k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
5.6 years ago Lucy ▴ 60
0
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1
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3.5k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
5.6 years ago Lucy ▴ 60
0
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0
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1.3k
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Comment: C: EdgeR blocking factor - missing paired sample
5.6 years ago Lucy ▴ 60
1
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2
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1.3k
views
EdgeR blocking factor - missing paired sample
EdgeR edgeR RNA-seq differential expression analysis blocking factors
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
0
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0
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7.1k
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Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
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1
reply
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
votes
1
reply
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
votes
1
reply
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
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2
replies
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
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1
reply
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
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0
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7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
votes
1
reply
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
5.7 years ago Lucy ▴ 60
0
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1
reply
7.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 60
0
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0
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1.6k
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Comment: C: DEsingle differential-expression analysis
5.9 years ago Lucy ▴ 60
2
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4
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1.6k
views
DEsingle differential-expression analysis
DEsingle RNA-seq differential-expression analysis
updated 5.9 years ago by ▴ 10 • written 6.2 years ago by ▴ 60
0
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0
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1.6k
views
Comment: C: bioMart error - The query to the BioMart webservice returned an invalid result:
6.6 years ago Lucy ▴ 60
60 results • Page 1 of 2
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