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3
votes
1
reply
169
views
Should I set a seed prior to running AUCell?
AUCell
updated 4 months ago by ★ 2.3k • written 4 months ago by ▴ 60
1
vote
0
replies
638
views
Comment: Comment: Subread installation
11 months ago Lucy ▴ 60
0
votes
1
reply
638
views
Comment: Comment: Subread installation
11 months ago Lucy ▴ 60
1
vote
4
replies
638
views
Subread installation
subread featureCounts
11 months ago Lucy ▴ 60
0
votes
0
replies
872
views
Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
13 months ago Lucy ▴ 60
0
votes
1
reply
872
views
Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
13 months ago Lucy ▴ 60
1
vote
5
replies
872
views
featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
subread Rsubread featureCounts RNA-seq
13 months ago Lucy ▴ 60
0
votes
0
replies
872
views
Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
13 months ago Lucy ▴ 60
0
votes
1
reply
1.4k
views
Comment: Comment: Negative binomial fitting DESeq2
21 months ago Lucy ▴ 60
0
votes
1
reply
1.4k
views
Comment: Comment: Negative binomial fitting DESeq2
21 months ago Lucy ▴ 60
3
votes
5
replies
1.4k
views
Negative binomial fitting DESeq2
DESeq2 RNA-seq
updated 21 months ago by 39k • written 21 months ago by ▴ 60
0
votes
0
replies
788
views
Comment: Comment: Is it always preferable to recount library sizes of DGEList object in edgeR afte
22 months ago Lucy ▴ 60
3
votes
2
replies
788
views
Is it always preferable to recount library sizes of DGEList object in edgeR after filtering?
edgeR RnaSeqSampleSizeData RNAseq
updated 22 months ago by 47k • written 22 months ago by ▴ 60
1
vote
21
replies
3.4k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 2.8 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
2.7 years ago Lucy ▴ 60
5
votes
10
replies
1.2k
views
EdgeR full model vs. reduced model - p-value for covariate
EdgeR differential expression analysis covariates
updated 2.7 years ago by 47k • written 2.7 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
2.7 years ago Lucy ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
2.7 years ago Lucy ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
2.7 years ago Lucy ▴ 60
0
votes
0
replies
410
views
Comment: C: EdgeR blocking factor - missing paired sample
2.7 years ago Lucy ▴ 60
1
vote
2
replies
410
views
EdgeR blocking factor - missing paired sample
EdgeR edgeR RNA-seq differential expression analysis blocking factors
updated 2.7 years ago by 47k • written 2.7 years ago by ▴ 60
0
votes
0
replies
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
2
replies
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
0
replies
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
2.8 years ago Lucy ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
updated 2.8 years ago by 25k • written 2.8 years ago by ▴ 60
0
votes
0
replies
680
views
Comment: C: DEsingle differential-expression analysis
3.0 years ago Lucy ▴ 60
2
votes
4
replies
680
views
DEsingle differential-expression analysis
DEsingle RNA-seq differential-expression analysis
updated 3.0 years ago by ▴ 10 • written 3.3 years ago by ▴ 60
0
votes
0
replies
879
views
Comment: C: bioMart error - The query to the BioMart webservice returned an invalid result:
3.7 years ago Lucy ▴ 60
4
votes
2
replies
879
views
bioMart error - The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt
updated 3.7 years ago by ★ 6.0k • written 3.7 years ago by ▴ 60
0
votes
0
replies
4.0k
views
Comment: C: sva::ComBat without covariate of interest?
3.8 years ago Lucy ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
4.2 years ago Lucy ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
4.2 years ago Lucy ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
4.2 years ago Lucy ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
4.2 years ago Lucy ▴ 60
0
votes
1
reply
855
views
Best csaw normalization approach for ATAC-seq data
csaw
updated 4.5 years ago by ★ 28k • written 4.6 years ago by ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: EdgeR normalization factors - do they take into account library size?
4.6 years ago Lucy ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: EdgeR normalization factors - do they take into account library size?
4.6 years ago Lucy ▴ 60
4
votes
6
replies
2.1k
views
EdgeR normalization factors - do they take into account library size?
edgeR
updated 4.6 years ago by 62k • written 4.6 years ago by ▴ 60
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