Bioconductor Differential expression analysis

Showing : differential expression analysis • reset

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1.3k

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EdgeR differential expression analysis covariates

updated 2.9 years ago by Gordon Smyth 47k • written 2.9 years ago by Lucy ▴ 60

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455

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EdgeR edgeR RNA-seq differential expression analysis blocking factors

updated 2.9 years ago by Gordon Smyth 47k • written 2.9 years ago by Lucy ▴ 60

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828

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deseq2 mirdeep2 microRNA differential expression analysis

updated 3.2 years ago by Michael Love 40k • written 3.2 years ago by ljbond • 0

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512

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microarray differential expression analysis GPL2025 affymetrix

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by pratikshasharma47 • 0

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4.3k

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deseq2 scRNA-Seq RNA-Seq differential expression analysis

updated 4.3 years ago by Michael Love 40k • written 4.3 years ago by hamza_karakurt ▴ 50

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2.6k

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deseq2 rna-seq differential expression analysis

4.3 years ago shreygandhi1990 ▴ 10

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1000

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differential expression analysis ballgown r batch effects total number of reads

updated 4.7 years ago by James W. MacDonald 63k • written 4.7 years ago by amy16 • 0

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Comment: Handling NA's in Deseq2 by Asger Mølgaard • 0

Dear ATpoint Thank you for your response - it works like a charm! You just saved a PhD-study! Thank you :)

Comment: Ensembl plants at annotationHub? by Bruno • 0

Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 3.6k

You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…

Comment: Query regarding phyloseq object construct with QIIME output by betterwound • 0

Thanks for sharing the code [geometry dash](https://geometrydash.io/)

Answer: Ensembl plants at annotationHub? by Bruno • 0

Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…

Votes

C: Minimum number of samples per treatment/group for WGCNA analysis

A: Minimum number of samples per treatment/group for WGCNA analysis

Minimum number of samples per treatment/group for WGCNA analysis

Comment: DESeq2 on multilevel design variable

Comment: Ensembl plants at annotationHub?

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