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460
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Comment: Comment: GSVA on separate healthy and disease datasets
15 days ago Lucy ▴ 60
0
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0
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460
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Comment: Comment: GSVA on separate healthy and disease datasets
15 days ago Lucy ▴ 60
1
vote
6
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460
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GSVA on separate healthy and disease datasets
GSVA
updated 15 days ago by 65k • written 16 days ago by ▴ 60
0
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0
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393
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
23 days ago Lucy ▴ 60
0
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1
reply
393
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
23 days ago Lucy ▴ 60
0
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4
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393
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Adjust RNA-seq counts (more than one batch variable) for plotting differentially expressed genes
ComBat sva edgeR
24 days ago • updated 23 days ago Lucy ▴ 60
0
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0
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601
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Comment: Comment: Help with model for differential expression analysis
12 weeks ago Lucy ▴ 60
0
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2
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601
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Comment: Comment: Help with model for differential expression analysis
3 months ago Lucy ▴ 60
0
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1
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601
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Comment: Comment: Help with model for differential expression analysis
3 months ago Lucy ▴ 60
0
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5
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601
views
Help with model for differential expression analysis
DifferentialExpression edgeR
3 months ago • updated 12 weeks ago Lucy ▴ 60
0
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0
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698
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
9 months ago • updated 8 months ago Lucy ▴ 60
2
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3
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698
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Applicability of AUCell to bulk RNA-seq
AUCell AUcell
9 months ago • updated 8 months ago Lucy ▴ 60
3
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1
reply
452
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Should I set a seed prior to running AUCell?
AUCell
updated 18 months ago by ★ 4.0k • written 18 months ago by ▴ 60
1
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0
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1.6k
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Comment: Comment: Subread installation
2.0 years ago Lucy ▴ 60
0
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1
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1.6k
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Comment: Comment: Subread installation
2.0 years ago Lucy ▴ 60
1
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4
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1.6k
views
Subread installation
subread featureCounts
2.0 years ago Lucy ▴ 60
0
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0
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1.9k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.2 years ago Lucy ▴ 60
0
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1
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1.9k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.2 years ago Lucy ▴ 60
1
vote
5
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1.9k
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featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
subread Rsubread featureCounts RNA-seq
2.2 years ago Lucy ▴ 60
0
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0
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1.9k
views
Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.2 years ago Lucy ▴ 60
0
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1
reply
2.5k
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Comment: Comment: Negative binomial fitting DESeq2
2.9 years ago Lucy ▴ 60
0
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1
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2.5k
views
Comment: Comment: Negative binomial fitting DESeq2
2.9 years ago Lucy ▴ 60
3
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5
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2.5k
views
Negative binomial fitting DESeq2
DESeq2 RNA-seq
updated 2.9 years ago by 41k • written 2.9 years ago by ▴ 60
3
votes
1
reply
1.7k
views
Is it always preferable to recount library sizes of DGEList object in edgeR after filtering?
edgeR RnaSeqSampleSizeData RNAseq
updated 3 months ago by 50k • written 3.0 years ago by ▴ 60
1
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21
replies
5.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 3.9 years ago by ▴ 60
0
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1
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2.0k
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Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.8 years ago Lucy ▴ 60
5
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10
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2.0k
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EdgeR full model vs. reduced model - p-value for covariate
EdgeR differential expression analysis covariates
updated 3.8 years ago by 50k • written 3.8 years ago by ▴ 60
0
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0
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2.0k
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Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.8 years ago Lucy ▴ 60
0
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1
reply
2.0k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.8 years ago Lucy ▴ 60
0
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1
reply
2.0k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.8 years ago Lucy ▴ 60
0
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0
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762
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Comment: C: EdgeR blocking factor - missing paired sample
3.8 years ago Lucy ▴ 60
1
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2
replies
762
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EdgeR blocking factor - missing paired sample
EdgeR edgeR RNA-seq differential expression analysis blocking factors
updated 3.8 years ago by 50k • written 3.8 years ago by ▴ 60
0
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0
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5.1k
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Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
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1
reply
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
votes
1
reply
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
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1
reply
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
votes
2
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5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
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1
reply
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
votes
0
replies
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
votes
1
reply
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
3.9 years ago Lucy ▴ 60
0
votes
1
reply
5.1k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 60
0
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0
replies
985
views
Comment: C: DEsingle differential-expression analysis
4.1 years ago Lucy ▴ 60
2
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4
replies
985
views
DEsingle differential-expression analysis
DEsingle RNA-seq differential-expression analysis
updated 4.1 years ago by ▴ 10 • written 4.4 years ago by ▴ 60
0
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0
replies
1.2k
views
Comment: C: bioMart error - The query to the BioMart webservice returned an invalid result:
4.8 years ago Lucy ▴ 60
4
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2
replies
1.2k
views
bioMart error - The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by ▴ 60
0
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0
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4.5k
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Comment: C: sva::ComBat without covariate of interest?
4.9 years ago Lucy ▴ 60
0
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1
reply
3.2k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
0
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1
reply
3.2k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
0
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1
reply
3.2k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
0
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1
reply
3.2k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
54 results • Page 1 of 2
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