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522
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Comment: Comment: GSVA on separate healthy and disease datasets
5 weeks ago Lucy ▴ 60
0
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0
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522
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Comment: Comment: GSVA on separate healthy and disease datasets
5 weeks ago Lucy ▴ 60
1
vote
6
replies
522
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GSVA on separate healthy and disease datasets
GSVA
updated 5 weeks ago by 65k • written 5 weeks ago by ▴ 60
0
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0
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448
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago Lucy ▴ 60
0
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1
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448
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago Lucy ▴ 60
0
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4
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448
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Adjust RNA-seq counts (more than one batch variable) for plotting differentially expressed genes
ComBat sva edgeR
6 weeks ago Lucy ▴ 60
0
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0
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643
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Comment: Comment: Help with model for differential expression analysis
3 months ago Lucy ▴ 60
0
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2
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643
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Comment: Comment: Help with model for differential expression analysis
4 months ago Lucy ▴ 60
0
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1
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643
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Comment: Comment: Help with model for differential expression analysis
4 months ago Lucy ▴ 60
0
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5
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643
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Help with model for differential expression analysis
DifferentialExpression edgeR
4 months ago • updated 3 months ago Lucy ▴ 60
0
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0
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766
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
9 months ago Lucy ▴ 60
2
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3
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766
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Applicability of AUCell to bulk RNA-seq
AUCell AUcell
9 months ago Lucy ▴ 60
3
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1
reply
473
views
Should I set a seed prior to running AUCell?
AUCell
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 60
1
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0
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1.6k
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Comment: Comment: Subread installation
2.1 years ago Lucy ▴ 60
0
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1
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1.6k
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Comment: Comment: Subread installation
2.1 years ago Lucy ▴ 60
1
vote
4
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1.6k
views
Subread installation
subread featureCounts
2.1 years ago Lucy ▴ 60
0
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0
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2.0k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.3 years ago Lucy ▴ 60
0
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1
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2.0k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.3 years ago Lucy ▴ 60
1
vote
5
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2.0k
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featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
subread Rsubread featureCounts RNA-seq
2.3 years ago Lucy ▴ 60
0
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0
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2.0k
views
Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.3 years ago Lucy ▴ 60
0
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1
reply
2.6k
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Comment: Comment: Negative binomial fitting DESeq2
2.9 years ago Lucy ▴ 60
0
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1
reply
2.6k
views
Comment: Comment: Negative binomial fitting DESeq2
2.9 years ago Lucy ▴ 60
3
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5
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2.6k
views
Negative binomial fitting DESeq2
DESeq2 RNA-seq
updated 2.9 years ago by 42k • written 2.9 years ago by ▴ 60
3
votes
1
reply
1.7k
views
Is it always preferable to recount library sizes of DGEList object in edgeR after filtering?
edgeR RnaSeqSampleSizeData RNAseq
updated 4 months ago by 50k • written 3.0 years ago by ▴ 60
1
vote
21
replies
5.2k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.0 years ago by ▴ 60
0
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1
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2.1k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.9 years ago Lucy ▴ 60
5
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10
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2.1k
views
EdgeR full model vs. reduced model - p-value for covariate
EdgeR differential expression analysis covariates
updated 3.9 years ago by 50k • written 3.9 years ago by ▴ 60
0
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0
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2.1k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.9 years ago Lucy ▴ 60
0
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1
reply
2.1k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.9 years ago Lucy ▴ 60
0
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1
reply
2.1k
views
Comment: C: EdgeR full model vs. reduced model - p-value for covariate
3.9 years ago Lucy ▴ 60
0
votes
0
replies
783
views
Comment: C: EdgeR blocking factor - missing paired sample
3.9 years ago Lucy ▴ 60
1
vote
2
replies
783
views
EdgeR blocking factor - missing paired sample
EdgeR edgeR RNA-seq differential expression analysis blocking factors
updated 3.9 years ago by 50k • written 3.9 years ago by ▴ 60
0
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0
replies
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
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1
reply
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
votes
2
replies
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
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1
reply
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
votes
0
replies
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
4.0 years ago Lucy ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Warning: unable to access index for repository https://bioconductor.org/packages
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 60
0
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0
replies
1.0k
views
Comment: C: DEsingle differential-expression analysis
4.2 years ago Lucy ▴ 60
2
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4
replies
1.0k
views
DEsingle differential-expression analysis
DEsingle RNA-seq differential-expression analysis
updated 4.2 years ago by ▴ 10 • written 4.5 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Comment: C: bioMart error - The query to the BioMart webservice returned an invalid result:
4.9 years ago Lucy ▴ 60
4
votes
2
replies
1.2k
views
bioMart error - The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 60
0
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0
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4.6k
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Comment: C: sva::ComBat without covariate of interest?
5.0 years ago Lucy ▴ 60
0
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1
reply
3.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
0
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1
reply
3.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
0
votes
1
reply
3.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
0
votes
1
reply
3.3k
views
Comment: C: ChIPpeakAnno, MACS format annotation
5.3 years ago Lucy ▴ 60
54 results • Page 1 of 2
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