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1
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1
reply
1.5k
views
enrichGO (clusterProfiler) produces different results
chipseq go enrichment clusterprofiler
updated 6.2 years ago by ★ 1.2k • written 6.2 years ago by ▴ 840
0
votes
4
replies
4.5k
views
error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 840
0
votes
4
replies
1.4k
views
contrast matrix design for a comparison (trend) of drug concentrations
limma contrast matrix affymetrix microarrays limma
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ▴ 840
0
votes
2
replies
1.1k
views
strange pseudo-image plot from MoGene 2.0 array
pseudoimage oligo affymetrix mouse gene arrays oligo package
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 840
2
votes
2
replies
1.8k
views
Affymetrix mogene 2.0 annotation data vs 2.1
affymetrix mouse gene arrays
updated 8.6 years ago by ★ 4.0k • written 8.6 years ago by ▴ 840
0
votes
4
replies
1.8k
views
get al microRNA target sites for a given gene
microRNA microRNA
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 840
0
votes
2
replies
1.8k
views
differences among pd.mogene.1.0.st.v1, mogene10sttranscriptcluster.db and mogene10stprobeset.db
Annotation oligo Annotation oligo
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 840
0
votes
1
reply
1.2k
views
boxplot/histograms on preprocessed SNP affy data with crlmm package
SNP oligo crlmm SNP oligo crlmm
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 840
0
votes
0
replies
1.7k
views
Is there an R package to export genotype data to PED /MAP files?
affy convert affy convert
11.9 years ago Javier Pérez Florido ▴ 840
0
votes
1
reply
1.1k
views
oligo: error in crlmm function
SNP oligo SNP oligo
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ▴ 840
0
votes
4
replies
1.5k
views
Definition of probes in lumiHumanAll annotation database
Annotation Annotation
updated 12.1 years ago by ▴ 350 • written 12.1 years ago by ▴ 840
0
votes
3
replies
1.1k
views
some questions about lumi package and Illumina arrays
Normalization probe limma lumi Normalization probe limma lumi
updated 12.1 years ago by ★ 3.6k • written 12.1 years ago by ▴ 840
0
votes
0
replies
1.3k
views
optimizing class weights in e1071
12.2 years ago Javier Pérez Florido ▴ 840
0
votes
2
replies
1.8k
views
problems using the latest version of e1071 (svm)
updated 12.2 years ago by 21k • written 12.2 years ago by ▴ 840
0
votes
1
reply
3.0k
views
svm (e1071) class weighting in a multi-class problem
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 840
0
votes
3
replies
1.6k
views
Human Gene array data analysis workflow
Normalization Normalization
updated 13.1 years ago by ★ 3.9k • written 13.1 years ago by ▴ 840
2
votes
5
replies
1.8k
views
two questions regarding Human Gene 1.0 ST arrays
Normalization Normalization
updated 13.1 years ago by ★ 3.9k • written 13.1 years ago by ▴ 840
0
votes
1
reply
952
views
differences between "manual" boxplots and "standard" boxplots of a oligo object
oligo oligo
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 840
0
votes
5
replies
1.1k
views
error in hugene10sttranscriptcluster
GO GO
updated 13.1 years ago by 65k • written 13.1 years ago by ▴ 840
0
votes
1
reply
819
views
Protein microarray analysis using Bioconductor
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 840
0
votes
1
reply
834
views
phenotypic information of ALLMLL data set
hgu133a hgu133a
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 840
0
votes
0
replies
586
views
justPlier default options
Normalization Normalization
14.0 years ago Javier Pérez Florido ▴ 840
0
votes
6
replies
1.4k
views
Human Gene ST using oligo package
Annotation oligo Annotation oligo
updated 14.0 years ago by ★ 4.3k • written 14.0 years ago by ▴ 840
0
votes
0
replies
718
views
Sequence analysis techniques in Bioconductor
Arabidopsis thaliana Arabidopsis thaliana
14.0 years ago Javier Pérez Florido ▴ 840
0
votes
11
replies
1.6k
views
Problems in MAplot for affybatch objects
updated 14.1 years ago by ★ 1.2k • written 14.1 years ago by ▴ 840
0
votes
0
replies
831
views
Accessing median and IQR values of MAplots
affyPLM affyPLM
14.1 years ago Javier Pérez Florido ▴ 840
0
votes
5
replies
1.1k
views
checking multi-modalities in histograms
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 840
0
votes
1
reply
836
views
building annotation package for porcine
Annotation Cancer genefilter limma Annotation Cancer genefilter limma
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 840
0
votes
6
replies
1.2k
views
farms package fails on estrogen data
Preprocessing Preprocessing
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 840
0
votes
2
replies
1.2k
views
function handle in R
convert convert
updated 14.3 years ago by 6.7k • written 14.3 years ago by ▴ 840
0
votes
2
replies
793
views
Improvements on GCRMA function
gcrma gcrma
updated 14.3 years ago by ▴ 260 • written 14.3 years ago by ▴ 840
0
votes
2
replies
2.8k
views
function handle in R
updated 14.3 years ago by ▴ 50 • written 14.3 years ago by ▴ 840
0
votes
8
replies
1.4k
views
running out of memory
14.3 years ago Javier Pérez Florido ▴ 840
0
votes
0
replies
1.2k
views
compare function in CMA package
Classification CMA Classification CMA
14.3 years ago Javier Pérez Florido ▴ 840
0
votes
1
reply
1.5k
views
tryCatch: go on executing after a warning message
GO GO
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 840
0
votes
3
replies
1.2k
views
Hypergeometric Testing questions
GO GOstats Category GO GOstats Category
updated 14.4 years ago by ★ 7.4k • written 14.4 years ago by ▴ 840
0
votes
1
reply
1.4k
views
nonspecific filtering prior to limma
Microarray genefilter limma Microarray genefilter limma
updated 14.5 years ago by ★ 5.5k • written 14.5 years ago by ▴ 840
0
votes
3
replies
1.4k
views
GSEAbase and limma
limma GSEABase limma GSEABase
updated 14.5 years ago by 50k • written 14.5 years ago by ▴ 840
0
votes
11
replies
1.7k
views
Nonspecific filtering on Human Gene ST 1.0 Arrays
genefilter genefilter
updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 840
0
votes
3
replies
1.5k
views
GeneSetCollection using EntrezID
Annotation Pathways GSEABase Annotation Pathways GSEABase
updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 840
0
votes
1
reply
889
views
Modifying annotation in Human Gene ST eset object
Annotation probe Annotation probe
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 840
0
votes
1
reply
1.3k
views
different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 840
0
votes
1
reply
972
views
export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 14.5 years ago by ▴ 500 • written 14.5 years ago by ▴ 840
0
votes
9
replies
1.3k
views
Human Gene ST 1.0 probeset controls
updated 14.5 years ago by ★ 3.9k • written 14.5 years ago by ▴ 840
0
votes
5
replies
2.1k
views
Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 840
0
votes
1
reply
996
views
Accessing COG/KOG database through Bioconductor
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 840
0
votes
2
replies
825
views
Does hist (affy) function work on probe-pair values or probe-set values?
Preprocessing probe graph Preprocessing probe graph
updated 14.6 years ago by ★ 2.0k • written 14.6 years ago by ▴ 840
0
votes
1
reply
931
views
How to modify PM/MM intensity values
probe probe
updated 14.7 years ago by 65k • written 14.7 years ago by ▴ 840
0
votes
2
replies
1.1k
views
preprocessing Affymetrix with threestep and expresso
Microarray Normalization Preprocessing affy gcrma Microarray Normalization Preprocessing
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ▴ 840
0
votes
1
reply
1000
views
getting original CEL files from Dilution
affydata affydata
updated 14.7 years ago by ★ 2.4k • written 14.7 years ago by ▴ 840
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