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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago svlachavas ▴ 840
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago svlachavas ▴ 840
25
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37
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17k
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Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
rnaseq RSEM TCGA edgeR normalization
updated 9.1 years ago by 53k • written 9.1 years ago by ▴ 840
1
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2
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17k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago svlachavas ▴ 840
1
vote
1
reply
17k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago svlachavas ▴ 840
0
votes
1
reply
17k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago svlachavas ▴ 840
0
votes
1
reply
17k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago svlachavas ▴ 840
1
vote
4
replies
2.9k
views
Possible transcription factor binding site enrichment analysis in R/Bioconductor and alternative suggestions
transcription factor binding site enrichment analysis bioconductor promoter analysis microarray
updated 9.2 years ago by ★ 13k • written 10.8 years ago by ▴ 840
0
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1
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2.8k
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Answer: A: Log-Transform Values of eSet
9.3 years ago svlachavas ▴ 840
1
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1
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2.2k
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 9.4 years ago by ▴ 650 • written 9.4 years ago by ▴ 840
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1
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1.7k
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Appropriate input of merged datasets regarding batch effect correction with ComBat in R
microarray batcheffectcorrection affymetrix microarrays ComBat sva
updated 9.6 years ago by ▴ 420 • written 9.6 years ago by ▴ 840
1
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1
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1.9k
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Answer: A: limma normalization and arrayWeights fold change
9.7 years ago svlachavas ▴ 840
0
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0
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1.3k
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Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
9.7 years ago svlachavas ▴ 840
0
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0
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1.4k
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Comment: C: Questions about the correct implementation of the function plotRLDF from R packa
9.7 years ago svlachavas ▴ 840
0
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1
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1.4k
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Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
limma microarray plotRLDF classification
9.7 years ago svlachavas ▴ 840
0
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0
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.7 years ago svlachavas ▴ 840
0
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1
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.7 years ago svlachavas ▴ 840
0
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1
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.7 years ago svlachavas ▴ 840
1
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1
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2.9k
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Answer: A: Combining data from multiple illumina microarray experiments
9.7 years ago svlachavas ▴ 840
0
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0
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5.7k
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Comment: C: Interpretation of results for treat & topTreat functions from limma regarding mi
9.7 years ago svlachavas ▴ 840
0
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1
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5.7k
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Comment: C: Interpretation of results for treat & topTreat functions from limma regarding mi
9.7 years ago svlachavas ▴ 840
0
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1
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5.7k
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Comment: C: Interpretation of results for treat & topTreat functions from limma regarding mi
9.7 years ago svlachavas ▴ 840
0
votes
1
reply
5.7k
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Comment: C: Interpretation of results for treat & topTreat functions from limma regarding mi
9.7 years ago svlachavas ▴ 840
0
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0
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5.7k
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Comment: C: Interpretation of results for treat & topTreat functions from limma regarding mi
9.7 years ago svlachavas ▴ 840
0
votes
2
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5.7k
views
Comment: C: Interpretation of results for treat & topTreat functions from limma regarding mi
9.7 years ago svlachavas ▴ 840
5
votes
10
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5.7k
views
Interpretation of results for treat & topTreat functions from limma regarding microarray abalysis
limma treat topTreat microarray
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 840
0
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0
replies
1.4k
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Correct creation of design matrix in limma for testing a specific comparison of interest in a microarray dataset
limma microarray design and contrast matrix
9.8 years ago svlachavas ▴ 840
0
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0
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7.9k
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Comment: C: Does limma calculate pvalues using log2 fold changes or with linear values?
9.8 years ago svlachavas ▴ 840
0
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2
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7.9k
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Answer: A: Does limma calculate pvalues using log2 fold changes or with linear values?
9.8 years ago svlachavas ▴ 840
0
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1
reply
5.0k
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Comment: C: Interaction models in limma and multiple factor assessement regarding microarray
9.9 years ago svlachavas ▴ 840
0
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0
replies
5.0k
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Comment: C: Interaction models in limma and multiple factor assessement regarding microarray
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.0k
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Comment: C: Interaction models in limma and multiple factor assessement regarding microarray
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.1k
views
Comment: C: How to import normalized file (using xps) to limma for differential expressed ge
9.9 years ago svlachavas ▴ 840
1
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0
replies
5.1k
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Comment: C: How to import normalized file (using xps) to limma for differential expressed ge
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.1k
views
Comment: C: How to import normalized file (using xps) to limma for differential expressed ge
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.1k
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Comment: C: How to import normalized file (using xps) to limma for differential expressed ge
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.1k
views
Comment: C: How to import normalized file (using xps) to limma for differential expressed ge
9.9 years ago svlachavas ▴ 840
1
vote
1
reply
3.0k
views
Comment: C: Filtering before the linear modelling and empirical bayes steps
9.9 years ago svlachavas ▴ 840
0
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1
reply
3.0k
views
Comment: C: Filtering before the linear modelling and empirical bayes steps
9.9 years ago svlachavas ▴ 840
1
vote
1
reply
3.0k
views
Comment: C: Filtering before the linear modelling and empirical bayes steps
9.9 years ago svlachavas ▴ 840
1
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2
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3.0k
views
Comment: C: Filtering before the linear modelling and empirical bayes steps
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
3.0k
views
Answer: A: Filtering before the linear modelling and empirical bayes steps
9.9 years ago svlachavas ▴ 840
0
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1
reply
5.0k
views
Comment: C: Interaction models in limma and multiple factor assessement regarding microarray
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.0k
views
Comment: C: Interaction models in limma and multiple factor assessement regarding microarray
9.9 years ago svlachavas ▴ 840
0
votes
1
reply
5.0k
views
Comment: C: Interaction models in limma and multiple factor assessement regarding microarray
9.9 years ago svlachavas ▴ 840
8
votes
12
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5.0k
views
Interaction models in limma and multiple factor assessement regarding microarray statistical inference
limma microarray interaction model multiple factor design makeContrasts
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 840
0
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0
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2.4k
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Comment: C: Weird error after trying to subset an microarray expression set with gene symbol
10.0 years ago svlachavas ▴ 840
0
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0
replies
2.4k
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Comment: C: Weird error after trying to subset an microarray expression set with gene symbol
10.0 years ago svlachavas ▴ 840
2
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4
replies
2.4k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 10.0 years ago by 25k • written 10.0 years ago by ▴ 840
0
votes
0
replies
2.5k
views
Comment: C: Evaluation of diagnostic plot resulted from ComBat function regarding batch effe
10.0 years ago svlachavas ▴ 840
536 results • Page 4 of 11
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