Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.6k
views
Comment: Comment: CAGEr bug report: wrong consensus cluster results
17 months ago Charles Plessy ▴ 180
1
vote
0
replies
1.6k
views
Answer: Answer: CAGEr bug report: wrong consensus cluster results
17 months ago Charles Plessy ▴ 180
0
votes
1
reply
2.0k
views
Answer: Answer: rowsum or similar for RleArray?
17 months ago Charles Plessy ▴ 180
0
votes
0
replies
1.6k
views
Comment: Comment: CAGEr bug report: wrong consensus cluster results
17 months ago Charles Plessy ▴ 180
0
votes
0
replies
1.6k
views
Comment: Comment: CAGEr bug report: wrong consensus cluster results
17 months ago Charles Plessy ▴ 180
0
votes
0
replies
1.6k
views
Comment: Comment: CAGEr bug report: wrong consensus cluster results
17 months ago Charles Plessy ▴ 180
0
votes
1
reply
1.7k
views
Comment: Comment: Generic functions for DataFrames of Rle objects ?
17 months ago Charles Plessy ▴ 180
0
votes
1
reply
724
views
Bioconductor tool for curating annotations?
Annotation
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 180
2
votes
2
replies
2.7k
views
Feature request: syntax for dropping unused seqlevels in GRanges objects
granges seqlevels feature request
updated 2.6 years ago by ▴ 20 • written 7.6 years ago by ▴ 180
1
vote
0
replies
984
views
How about a getSeq() method for GRanges ?
GenomicRanges BSGenome
2.7 years ago Charles Plessy ▴ 180
0
votes
0
replies
626
views
Text display of entire `DNAMultipleAlignment` objects
Biostrings
2.8 years ago Charles Plessy ▴ 180
0
votes
0
replies
822
views
Pairwise alignment results with the original coordinates.
Biostrings Alignment
2.9 years ago Charles Plessy ▴ 180
2
votes
0
replies
1.5k
views
Answer: Answer: strand-aware GRanges shift
2.9 years ago Charles Plessy ▴ 180
2
votes
1
reply
1.1k
views
How to find the BSgenome object that provided the seqinfo of a GRanges object ?
BSgenome
updated 2.9 years ago by 16k • written 2.9 years ago by ▴ 180
4
votes
1
reply
1.3k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 3.0 years ago by 16k • written 3.0 years ago by ▴ 180
0
votes
0
replies
1.3k
views
Comment: Comment: Please allow integers in `numeric` format in `seqlengths`
3.1 years ago Charles Plessy ▴ 180
3
votes
2
replies
1.3k
views
Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 3.1 years ago by 16k • written 3.1 years ago by ▴ 180
0
votes
0
replies
1.5k
views
Comment: Comment: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
3.1 years ago Charles Plessy ▴ 180
4
votes
1
reply
938
views
`promoters()` fails on `GPos` objects
GenomicRanges
updated 3.1 years ago by 16k • written 3.1 years ago by ▴ 180
0
votes
0
replies
1.2k
views
Answer: Answer: CAGEr: Problem when running getCTSS
3.1 years ago Charles Plessy ▴ 180
0
votes
0
replies
997
views
Comment: Comment: CAGEexp vs CAGErseq
3.1 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.4k
views
Comment: Comment: Handling missing seqlenghts
3.1 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.4k
views
Handling missing seqlenghts
GenomicRanges
3.2 years ago • updated 3.1 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.3k
views
Comment: Comment: BLAST-like alignment of a DNAString to a BSgenome?
3.2 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.3k
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
3.2 years ago Charles Plessy ▴ 180
0
votes
1
reply
717
views
Comment: Comment: Please merge Charles-23991 and 7857
3.3 years ago Charles Plessy ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: CAGEr promoter width graph
4.3 years ago Charles Plessy ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: CAGEr promoter width graph
4.3 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.0k
views
Comment: C: CAGEr quantilePositions() takes forever to run
4.6 years ago Charles Plessy ▴ 180
3
votes
6
replies
1.5k
views
Better way to find head to head GRanges?
promoter
updated 4.6 years ago by 16k • written 4.6 years ago by ▴ 180
0
votes
2
replies
1.0k
views
Comment: C: CAGEr quantilePositions() takes forever to run
4.6 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.5k
views
Comment: C: Better way to find head to head GRanges?
4.6 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.5k
views
Comment: C: Better way to find head to head ranges?
4.6 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.5k
views
Answer: A: Behaviour of getCTSS on a CAGEset - extra reads?
4.6 years ago Charles Plessy ▴ 180
0
votes
1
reply
862
views
Is there an easy way to do pos(x) <- pos(x) + 1 for a GPos object ?
GenomicRanges GPos
4.6 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.1k
views
Comment: C: CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
4.6 years ago Charles Plessy ▴ 180
0
votes
1
reply
1.1k
views
Answer: A: CAGEsr: Quantile Values (q_0.1 and q_0.9)in CAGEset / CAGEex objects
4.6 years ago Charles Plessy ▴ 180
1
vote
0
replies
1.4k
views
Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.6 years ago Charles Plessy ▴ 180
1
vote
1
reply
1.4k
views
Answer: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.6 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.4k
views
Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.6 years ago Charles Plessy ▴ 180
0
votes
1
reply
1.4k
views
Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.6 years ago Charles Plessy ▴ 180
2
votes
1
reply
716
views
How to make a GPos subclass that accept both UnstitchedGPos and StitchedGPos inputs?
GenomicRanges
updated 5.4 years ago by 16k • written 5.4 years ago by ▴ 180
0
votes
1
reply
1.5k
views
Answer: A: Behaviour of getCTSS on a CAGEset - extra reads?
5.4 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.5k
views
Comment: C: Behaviour of getCTSS on a CAGEset - extra reads?
5.4 years ago Charles Plessy ▴ 180
0
votes
1
reply
1.5k
views
Comment: C: Behaviour of getCTSS on a CAGEset - extra reads?
5.4 years ago Charles Plessy ▴ 180
1
vote
1
reply
1.5k
views
Comment: C: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
5.6 years ago Charles Plessy ▴ 180
1
vote
1
reply
1.5k
views
Comment: C: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
5.6 years ago Charles Plessy ▴ 180
0
votes
0
replies
1.1k
views
Comment: C: a problem from import CTSStable in CAGEr
6.0 years ago Charles Plessy ▴ 180
1
vote
0
replies
2.7k
views
Comment: C: bam2CTSS function error from CAGEr package
6.2 years ago Charles Plessy ▴ 180
1
vote
2
replies
2.7k
views
Comment: C: bam2CTSS function error from CAGEr package
6.2 years ago Charles Plessy ▴ 180
77 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6