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2
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2
replies
1.4k
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Feature request: syntax for dropping unused seqlevels in GRanges objects
granges seqlevels feature request
updated 4 weeks ago by ▴ 10 • written 5.1 years ago by ▴ 170
1
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0
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90
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How about a getSeq() method for GRanges ?
GenomicRanges BSGenome
10 weeks ago Charles Plessy ▴ 170
0
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0
replies
84
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Text display of entire `DNAMultipleAlignment` objects
Biostrings
4 months ago Charles Plessy ▴ 170
0
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0
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92
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Pairwise alignment results with the original coordinates.
Biostrings Alignment
4 months ago Charles Plessy ▴ 170
2
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0
replies
283
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Answer: Answer: strand-aware GRanges shift
4 months ago Charles Plessy ▴ 170
2
votes
1
reply
188
views
How to find the BSgenome object that provided the seqinfo of a GRanges object ?
BSgenome
updated 5 months ago by 15k • written 5 months ago by ▴ 170
4
votes
1
reply
263
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Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 5 months ago by 15k • written 6 months ago by ▴ 170
0
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0
replies
407
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Comment: Comment: Please allow integers in `numeric` format in `seqlengths`
6 months ago Charles Plessy ▴ 170
3
votes
2
replies
407
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Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 6 months ago by 15k • written 7 months ago by ▴ 170
0
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0
replies
597
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Comment: Comment: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
7 months ago Charles Plessy ▴ 170
4
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1
reply
221
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`promoters()` fails on `GPos` objects
GenomicRanges
updated 7 months ago by 15k • written 7 months ago by ▴ 170
0
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0
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385
views
Answer: Answer: CAGEr: Problem when running getCTSS
7 months ago Charles Plessy ▴ 170
0
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0
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351
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Comment: Comment: CAGEexp vs CAGErseq
8 months ago Charles Plessy ▴ 170
0
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0
replies
287
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Comment: Comment: Handling missing seqlenghts
8 months ago Charles Plessy ▴ 170
0
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2
replies
287
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Handling missing seqlenghts
GenomicRanges
8 months ago Charles Plessy ▴ 170
0
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0
replies
254
views
Comment: Comment: BLAST-like alignment of a DNAString to a BSgenome?
8 months ago Charles Plessy ▴ 170
0
votes
2
replies
254
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BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
8 months ago Charles Plessy ▴ 170
0
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1
reply
279
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Comment: Comment: Please merge Charles-23991 and 7857
9 months ago Charles Plessy ▴ 170
0
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1
reply
513
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Comment: C: CAGEr promoter width graph
21 months ago Charles Plessy ▴ 170
0
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1
reply
513
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Comment: C: CAGEr promoter width graph
21 months ago Charles Plessy ▴ 170
0
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0
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331
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Comment: C: CAGEr quantilePositions() takes forever to run
2.1 years ago Charles Plessy ▴ 170
3
votes
6
replies
489
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Better way to find head to head GRanges?
promoter
updated 2.1 years ago by 15k • written 2.1 years ago by ▴ 170
0
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2
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331
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Comment: C: CAGEr quantilePositions() takes forever to run
2.1 years ago Charles Plessy ▴ 170
0
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0
replies
489
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Comment: C: Better way to find head to head GRanges?
2.1 years ago Charles Plessy ▴ 170
0
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0
replies
489
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Comment: C: Better way to find head to head ranges?
2.1 years ago Charles Plessy ▴ 170
0
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0
replies
668
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Answer: A: Behaviour of getCTSS on a CAGEset - extra reads?
2.1 years ago Charles Plessy ▴ 170
0
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1
reply
312
views
Is there an easy way to do pos(x) <- pos(x) + 1 for a GPos object ?
GenomicRanges GPos
2.1 years ago Charles Plessy ▴ 170
0
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0
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315
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Comment: C: CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
2.1 years ago Charles Plessy ▴ 170
0
votes
1
reply
315
views
Answer: A: CAGEsr: Quantile Values (q_0.1 and q_0.9)in CAGEset / CAGEex objects
2.1 years ago Charles Plessy ▴ 170
1
vote
0
replies
440
views
Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
2.1 years ago Charles Plessy ▴ 170
1
vote
1
reply
440
views
Answer: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
2.1 years ago Charles Plessy ▴ 170
0
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0
replies
440
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Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
2.1 years ago Charles Plessy ▴ 170
0
votes
1
reply
440
views
Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
2.1 years ago Charles Plessy ▴ 170
2
votes
1
reply
373
views
How to make a GPos subclass that accept both UnstitchedGPos and StitchedGPos inputs?
GenomicRanges
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 170
0
votes
1
reply
668
views
Answer: A: Behaviour of getCTSS on a CAGEset - extra reads?
2.9 years ago Charles Plessy ▴ 170
0
votes
0
replies
668
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Comment: C: Behaviour of getCTSS on a CAGEset - extra reads?
2.9 years ago Charles Plessy ▴ 170
0
votes
1
reply
668
views
Comment: C: Behaviour of getCTSS on a CAGEset - extra reads?
2.9 years ago Charles Plessy ▴ 170
1
vote
1
reply
597
views
Comment: C: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
3.1 years ago Charles Plessy ▴ 170
1
vote
1
reply
597
views
Comment: C: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
3.1 years ago Charles Plessy ▴ 170
0
votes
0
replies
445
views
Comment: C: a problem from import CTSStable in CAGEr
3.5 years ago Charles Plessy ▴ 170
1
vote
0
replies
1.2k
views
Comment: C: bam2CTSS function error from CAGEr package
3.7 years ago Charles Plessy ▴ 170
1
vote
2
replies
1.2k
views
Comment: C: bam2CTSS function error from CAGEr package
3.7 years ago Charles Plessy ▴ 170
1
vote
1
reply
1.2k
views
Comment: C: bam2CTSS function error from CAGEr package
3.7 years ago Charles Plessy ▴ 170
1
vote
1
reply
616
views
Comment: C: no import.bam function in CAGEr version 1.22.3
3.7 years ago Charles Plessy ▴ 170
1
vote
1
reply
1.2k
views
Comment: C: bam2CTSS function error from CAGEr package
3.7 years ago Charles Plessy ▴ 170
1
vote
1
reply
616
views
Comment: C: no import.bam function in CAGEr version 1.22.3
3.7 years ago Charles Plessy ▴ 170
0
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0
replies
428
views
Comment: C: CAGEr: consensusCluster doesn't have dominant CTSS info
4.1 years ago Charles Plessy ▴ 170
0
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0
replies
747
views
Answer: A: CAGEr - How to change plot axis range in CAGEr
4.2 years ago Charles Plessy ▴ 170
2
votes
1
reply
722
views
Build error: could not find function "bplapply"
biocparallel build report
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 170
0
votes
0
replies
3.2k
views
Comment: C: What is the proper way to modify mcols of a GRanges inside a GRangesList?
4.5 years ago Charles Plessy ▴ 170
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