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Comment: Comment: CAGEr bug report: wrong consensus cluster results
10 months ago Charles Plessy ▴ 180
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Answer: Answer: CAGEr bug report: wrong consensus cluster results
10 months ago Charles Plessy ▴ 180
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1
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1.7k
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Answer: Answer: rowsum or similar for RleArray?
10 months ago Charles Plessy ▴ 180
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1.2k
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Comment: Comment: CAGEr bug report: wrong consensus cluster results
10 months ago Charles Plessy ▴ 180
0
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1.2k
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Comment: Comment: CAGEr bug report: wrong consensus cluster results
10 months ago Charles Plessy ▴ 180
0
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0
replies
1.2k
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Comment: Comment: CAGEr bug report: wrong consensus cluster results
10 months ago Charles Plessy ▴ 180
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1
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1.4k
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Comment: Comment: Generic functions for DataFrames of Rle objects ?
10 months ago Charles Plessy ▴ 180
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1
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548
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Bioconductor tool for curating annotations?
Annotation
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 180
2
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2
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2.4k
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Feature request: syntax for dropping unused seqlevels in GRanges objects
granges seqlevels feature request
updated 24 months ago by ▴ 20 • written 7.0 years ago by ▴ 180
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0
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791
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How about a getSeq() method for GRanges ?
GenomicRanges BSGenome
2.1 years ago Charles Plessy ▴ 180
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0
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478
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Text display of entire `DNAMultipleAlignment` objects
Biostrings
2.2 years ago Charles Plessy ▴ 180
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0
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664
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Pairwise alignment results with the original coordinates.
Biostrings Alignment
2.3 years ago Charles Plessy ▴ 180
2
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0
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1.2k
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Answer: Answer: strand-aware GRanges shift
2.3 years ago Charles Plessy ▴ 180
2
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1
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837
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How to find the BSgenome object that provided the seqinfo of a GRanges object ?
BSgenome
updated 2.3 years ago by 16k • written 2.3 years ago by ▴ 180
4
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1
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1.0k
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Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.4 years ago by 16k • written 2.4 years ago by ▴ 180
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0
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1.1k
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Comment: Comment: Please allow integers in `numeric` format in `seqlengths`
2.5 years ago Charles Plessy ▴ 180
3
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2
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1.1k
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Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 2.5 years ago by 16k • written 2.5 years ago by ▴ 180
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0
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1.3k
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Comment: Comment: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
2.5 years ago Charles Plessy ▴ 180
4
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1
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764
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`promoters()` fails on `GPos` objects
GenomicRanges
updated 2.5 years ago by 16k • written 2.5 years ago by ▴ 180
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0
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971
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Answer: Answer: CAGEr: Problem when running getCTSS
2.5 years ago Charles Plessy ▴ 180
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0
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839
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Comment: Comment: CAGEexp vs CAGErseq
2.6 years ago Charles Plessy ▴ 180
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0
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1.1k
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Comment: Comment: Handling missing seqlenghts
2.6 years ago Charles Plessy ▴ 180
0
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2
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1.1k
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Handling missing seqlenghts
GenomicRanges
2.6 years ago Charles Plessy ▴ 180
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0
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1.0k
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Comment: Comment: BLAST-like alignment of a DNAString to a BSgenome?
2.6 years ago Charles Plessy ▴ 180
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2
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1.0k
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BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
2.6 years ago Charles Plessy ▴ 180
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1
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572
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Comment: Comment: Please merge Charles-23991 and 7857
2.7 years ago Charles Plessy ▴ 180
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1
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1.1k
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Comment: C: CAGEr promoter width graph
3.7 years ago Charles Plessy ▴ 180
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1
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1.1k
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Comment: C: CAGEr promoter width graph
3.7 years ago Charles Plessy ▴ 180
0
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0
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847
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Comment: C: CAGEr quantilePositions() takes forever to run
4.0 years ago Charles Plessy ▴ 180
3
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6
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1.2k
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Better way to find head to head GRanges?
promoter
updated 4.0 years ago by 16k • written 4.0 years ago by ▴ 180
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2
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847
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Comment: C: CAGEr quantilePositions() takes forever to run
4.0 years ago Charles Plessy ▴ 180
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0
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1.2k
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Comment: C: Better way to find head to head GRanges?
4.0 years ago Charles Plessy ▴ 180
0
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0
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1.2k
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Comment: C: Better way to find head to head ranges?
4.0 years ago Charles Plessy ▴ 180
0
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0
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1.3k
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Answer: A: Behaviour of getCTSS on a CAGEset - extra reads?
4.0 years ago Charles Plessy ▴ 180
0
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1
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714
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Is there an easy way to do pos(x) <- pos(x) + 1 for a GPos object ?
GenomicRanges GPos
4.0 years ago Charles Plessy ▴ 180
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0
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857
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Comment: C: CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
4.0 years ago Charles Plessy ▴ 180
0
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1
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857
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Answer: A: CAGEsr: Quantile Values (q_0.1 and q_0.9)in CAGEset / CAGEex objects
4.0 years ago Charles Plessy ▴ 180
1
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0
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1.2k
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Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.0 years ago Charles Plessy ▴ 180
1
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1
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1.2k
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Answer: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.0 years ago Charles Plessy ▴ 180
0
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0
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1.2k
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Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.0 years ago Charles Plessy ▴ 180
0
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1
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1.2k
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Comment: C: CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width
4.0 years ago Charles Plessy ▴ 180
2
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1
reply
621
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How to make a GPos subclass that accept both UnstitchedGPos and StitchedGPos inputs?
GenomicRanges
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 180
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1
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1.3k
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Answer: A: Behaviour of getCTSS on a CAGEset - extra reads?
4.8 years ago Charles Plessy ▴ 180
0
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0
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1.3k
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Comment: C: Behaviour of getCTSS on a CAGEset - extra reads?
4.8 years ago Charles Plessy ▴ 180
0
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1
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1.3k
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Comment: C: Behaviour of getCTSS on a CAGEset - extra reads?
4.8 years ago Charles Plessy ▴ 180
1
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1
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1.3k
views
Comment: C: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
5.0 years ago Charles Plessy ▴ 180
1
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1
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1.3k
views
Comment: C: Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of th
5.0 years ago Charles Plessy ▴ 180
0
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0
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912
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Comment: C: a problem from import CTSStable in CAGEr
5.4 years ago Charles Plessy ▴ 180
1
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0
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2.3k
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Comment: C: bam2CTSS function error from CAGEr package
5.6 years ago Charles Plessy ▴ 180
1
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2
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2.3k
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Comment: C: bam2CTSS function error from CAGEr package
5.6 years ago Charles Plessy ▴ 180
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