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3
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2
replies
1.9k
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DEG analysis by limma
DEG Limma
updated 8.4 years ago by ★ 28k • written 8.4 years ago by ▴ 20
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Comment: C: DEG analysis of chemo-sensitive vs resistance by limma
8.4 years ago Shamim Sarhadi ▴ 20
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1
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1.8k
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Comment: C: DEG analysis of chemo-sensitive vs resistance by limma
8.4 years ago Shamim Sarhadi ▴ 20
4
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7
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1.8k
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DEG analysis of chemo-sensitive vs resistance by limma
limma microarray DEG
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 20
0
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0
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1.8k
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Comment: C: DEG analysis of chemo-sensitive vs resistance by limma
8.4 years ago Shamim Sarhadi ▴ 20
0
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0
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1.4k
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Comment: C: Summarization probe ID to gene : FRMA
8.6 years ago Shamim Sarhadi ▴ 20
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1
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1.4k
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Comment: C: Summarization probe ID to gene : FRMA
8.6 years ago Shamim Sarhadi ▴ 20
1
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4
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1.4k
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Summarization probe ID to gene : FRMA
summarization FRMA affy
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 20
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0
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1.1k
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sigcheck 'clear_cluster' receive data failed error
sigchek software error
8.9 years ago Shamim Sarhadi ▴ 20
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0
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1.6k
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Comment: C: SigCheck 2.2.0 regression: please use 2.2.1 and later!
8.9 years ago Shamim Sarhadi ▴ 20
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0
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1.6k
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Comment: C: Comparison between two outputs of limmas toptable function from a filtered and u
9.1 years ago Shamim Sarhadi ▴ 20
0
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2
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1.6k
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Comparison between two outputs of limmas toptable function from filtered and unfiltered dataset
limma taptable DEG
9.1 years ago Shamim Sarhadi ▴ 20
5
votes
12
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2.5k
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Filtering before the linear modelling and empirical bayes steps
DEG Limma Filtering
updated 9.1 years ago by ★ 7.9k • written 9.1 years ago by ▴ 20
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0
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2.5k
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Comment: C: Filtering before the linear modelling and empirical bayes steps
9.1 years ago Shamim Sarhadi ▴ 20
0
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1
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2.5k
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Comment: C: Filtering before the linear modelling and empirical bayes steps
9.1 years ago Shamim Sarhadi ▴ 20
0
votes
1
reply
2.5k
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Comment: C: Filtering before the linear modelling and empirical bayes steps
9.1 years ago Shamim Sarhadi ▴ 20
0
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0
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1.2k
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Comment: C: Error ,when I use "pa.calls" function on my dataset
9.1 years ago Shamim Sarhadi ▴ 20
0
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1
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1.2k
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Error ,when I use "pa.calls" function on my dataset
panp Combat
9.1 years ago Shamim Sarhadi ▴ 20
0
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1
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2.5k
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Comment: C: Filtering before the linear modelling and empirical bayes steps
9.1 years ago Shamim Sarhadi ▴ 20
0
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0
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1.8k
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Comment: C: error in drawing MDS plot for eset
9.1 years ago Shamim Sarhadi ▴ 20
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0
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1.8k
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Comment: C: error in drawing MDS plot for eset
9.1 years ago Shamim Sarhadi ▴ 20
0
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3
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1.8k
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error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 9.1 years ago by 68k • written 9.1 years ago by ▴ 20
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0
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2.5k
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Comment: C: Filtering before the linear modelling and empirical bayes steps
9.1 years ago Shamim Sarhadi ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: Filtering before the linear modelling and empirical bayes steps
9.1 years ago Shamim Sarhadi ▴ 20
0
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0
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1.5k
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Comment: C: DEG test for two closely related conditions with limma
9.2 years ago Shamim Sarhadi ▴ 20
0
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3
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1.5k
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DEG test for two closely related conditions with limma
limma DEG
updated 9.2 years ago by ★ 28k • written 9.2 years ago by ▴ 20
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0
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1.5k
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Comment: C: DEG test for two closely related conditions with limma
9.2 years ago Shamim Sarhadi ▴ 20
0
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1
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2.0k
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Comment: C: A rational way for selecting the number of DEG with significant p-value for GSEA
9.2 years ago Shamim Sarhadi ▴ 20
2
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4
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2.0k
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A rational way for selecting the number of DEG with significant p-value for GSEA
GSEA DEG
updated 9.2 years ago by 52k • written 9.2 years ago by ▴ 20
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0
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1.7k
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Comment: C: Error in installing multiClust package
9.2 years ago Shamim Sarhadi ▴ 20
0
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1
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1.7k
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Comment: C: Error in installing multiClust package
9.2 years ago Shamim Sarhadi ▴ 20
0
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0
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1.7k
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Comment: C: Error in installing multiClust package
9.2 years ago Shamim Sarhadi ▴ 20
3
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5
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1.7k
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Error in installing multiClust package
package installation
9.2 years ago Shamim Sarhadi ▴ 20
0
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0
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1.1k
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Comment: C: giving weight to DEG from limma output
9.2 years ago Shamim Sarhadi ▴ 20
1
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2
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1.1k
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giving weight to DEG from limma output
limma GSEA
updated 9.2 years ago by ★ 28k • written 9.2 years ago by ▴ 20
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0
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1.8k
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Answer: A: drop levels in eSet pData
9.2 years ago Shamim Sarhadi ▴ 20
4
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2
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1.8k
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drop levels in eSet pData
subsetting eSet
9.2 years ago Shamim Sarhadi ▴ 20
4
votes
1
reply
956
views
finding DEG in a dataset with big sample size
limma
updated 9.2 years ago by ★ 28k • written 9.2 years ago by ▴ 20
2
votes
2
replies
1.5k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 20
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