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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.6 years ago Biologist ▴ 120
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.6 years ago Biologist ▴ 120
0
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1
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5.0k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.6 years ago Biologist ▴ 120
0
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1
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5.0k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.6 years ago Biologist ▴ 120
1
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0
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5.0k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.6 years ago Biologist ▴ 120
0
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1
reply
5.0k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
5.6 years ago Biologist ▴ 120
7
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16
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5.0k
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How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer
updated 11 months ago by • 0 • written 5.6 years ago by ▴ 120
0
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1
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4.1k
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Comment: C: Use of batch corrected (removeBatchEffect) read counts for further downstream an
6.5 years ago Biologist ▴ 120
0
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0
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2.3k
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Comment: C: edgeR removing batch effect before using expression data for clustering
6.5 years ago Biologist ▴ 120
0
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1
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2.3k
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Comment: C: edgeR removing batch effect before using expression data for clustering
6.5 years ago Biologist ▴ 120
0
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1
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2.3k
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Comment: C: edgeR removing batch effect before using expression data for clustering
6.5 years ago Biologist ▴ 120
1
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6
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2.3k
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edgeR removing batch effect before using expression data for clustering
edger r batcheffect clustering removeBatchEffect
updated 6.5 years ago by 68k • written 6.5 years ago by ▴ 120
0
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0
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5.0k
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Comment: C: How to get t-statistic values using edgeR?
6.5 years ago Biologist ▴ 120
0
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2
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5.0k
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Comment: C: How to get t-statistic values using edgeR?
6.5 years ago Biologist ▴ 120
8
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5
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5.0k
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How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 6.5 years ago by 53k • written 6.5 years ago by ▴ 120
0
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0
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3.2k
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Comment: C: EdgeR for differential analysis between two cell lines without replication
7.3 years ago Biologist ▴ 120
3
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8
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3.2k
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EdgeR for differential analysis between two cell lines without replication
edger differential gene expression rnaseq
updated 7.3 years ago by 53k • written 7.3 years ago by ▴ 120
0
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1
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3.2k
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Comment: C: EdgeR error for differential analysis between two cell lines
7.3 years ago Biologist ▴ 120
0
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1
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3.2k
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Comment: C: EdgeR error for differential analysis between two cell lines
7.3 years ago Biologist ▴ 120
0
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0
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2.7k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
7.4 years ago Biologist ▴ 120
3
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4
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2.7k
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Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
edgeR r bioconductor diffferential expression fdr
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 120
0
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0
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2.7k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
7.4 years ago Biologist ▴ 120
5
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4
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3.4k
views
Why DESeq2 and edgeR give different results?
deseq2 rnaseq differential gene expression edger
updated 4.5 years ago by 53k • written 7.5 years ago by ▴ 120
0
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0
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3.4k
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Comment: C: Why DESeq2 and edgeR give different results?
7.5 years ago Biologist ▴ 120
0
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0
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3.4k
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Comment: C: Why DESeq2 and edgeR give different results?
7.5 years ago Biologist ▴ 120
0
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1
reply
9.4k
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Comment: C: Filtering step for differential analysis in edgeR
7.5 years ago Biologist ▴ 120
0
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1
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9.4k
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Comment: C: Filtering step for differential analysis in edgeR
7.5 years ago Biologist ▴ 120
0
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1
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9.4k
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Comment: C: Filtering step for differential analysis in edgeR
7.5 years ago Biologist ▴ 120
5
votes
12
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9.4k
views
Filtering step for differential analysis in edgeR
r edger differential gene expression filtering bioconductor
updated 7.5 years ago by 53k • written 7.5 years ago by ▴ 120
0
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1
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9.4k
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Comment: C: Filtering step for differential analysis in edgeR
7.5 years ago Biologist ▴ 120
0
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1
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9.4k
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Comment: C: Filtering step for differential analysis in edgeR
7.5 years ago Biologist ▴ 120
0
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1
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5.8k
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Comment: C: Principle component analysis plot with gene expression data
7.5 years ago Biologist ▴ 120
0
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1
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5.8k
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Comment: C: Principle component analysis plot with gene expression data
7.5 years ago Biologist ▴ 120
3
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6
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5.8k
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Principle component analysis plot with gene expression data
r pca rnaseq edger ggbiplot
updated 7.5 years ago by 68k • written 7.5 years ago by ▴ 120
0
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1
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4.4k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
7.6 years ago Biologist ▴ 120
1
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1
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4.4k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
7.6 years ago Biologist ▴ 120
19
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8
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4.4k
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How to check the read length for all the TCGA data samples in GDC?
gdc tcga wes gdc data
updated 7.6 years ago by 21k • written 7.6 years ago by ▴ 120
0
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0
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4.4k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
7.6 years ago Biologist ▴ 120
0
votes
1
reply
48k
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Comment: C: Differential expression analysis starting from TPM data
7.6 years ago Biologist ▴ 120
0
votes
1
reply
48k
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Comment: C: Differential expression analysis starting from TPM data
7.6 years ago Biologist ▴ 120
0
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1
reply
2.0k
views
Comment: C: kegga error from edgeR
7.7 years ago Biologist ▴ 120
0
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3
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2.0k
views
kegga error from edgeR
edger r bioconductor pathway analysis kegg
updated 7.7 years ago by 53k • written 7.7 years ago by ▴ 120
0
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2
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1.5k
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Differential analysis between single sample vs single sample (control vs treatment) with no replicates
r bioconductor limma edger deseq2
updated 7.8 years ago by ★ 29k • written 7.8 years ago by ▴ 120
0
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0
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2.1k
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Comment: C: how to reformat complex list object (derived with TCGAbiolinks)?
7.8 years ago Biologist ▴ 120
1
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3
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5.3k
views
How to select top 10% highly variable genes in microarray data?
r microarray snp6.0 oligo
updated 7.8 years ago by ▴ 360 • written 7.8 years ago by ▴ 120
0
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0
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5.3k
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Comment: C: How to select top 10% highly variable genes in microarray data?
7.8 years ago Biologist ▴ 120
0
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3
replies
1.9k
views
Root installation for xps on cluster
xps root
updated 7.9 years ago by • 0 • written 9.6 years ago by ▴ 120
0
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0
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2.1k
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Answer: A: TCGABiolinks::GDCquery() suddenly sending back unknown error
8.0 years ago Biologist ▴ 120
1
vote
3
replies
1.9k
views
How to normalize Microarray expression data?
r affymetrix microarrays normalization bioconductor
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 120
0
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0
replies
3.4k
views
Comment: C: Why Differential expression results differ with edgeR and limma ?
8.2 years ago Biologist ▴ 120
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