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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.8 years ago Biologist ▴ 120
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.8 years ago Biologist ▴ 120
0
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1
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4.0k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.8 years ago Biologist ▴ 120
0
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1
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4.0k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.8 years ago Biologist ▴ 120
1
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0
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4.0k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.8 years ago Biologist ▴ 120
0
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1
reply
4.0k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.8 years ago Biologist ▴ 120
7
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16
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4.0k
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How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer
updated 6 weeks ago by • 0 • written 4.8 years ago by ▴ 120
0
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1
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3.5k
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Comment: C: Use of batch corrected (removeBatchEffect) read counts for further downstream an
5.6 years ago Biologist ▴ 120
0
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0
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2.0k
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Comment: C: edgeR removing batch effect before using expression data for clustering
5.6 years ago Biologist ▴ 120
0
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1
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2.0k
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Comment: C: edgeR removing batch effect before using expression data for clustering
5.6 years ago Biologist ▴ 120
0
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1
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2.0k
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Comment: C: edgeR removing batch effect before using expression data for clustering
5.6 years ago Biologist ▴ 120
1
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6
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2.0k
views
edgeR removing batch effect before using expression data for clustering
edger r batcheffect clustering removeBatchEffect
updated 5.6 years ago by 67k • written 5.6 years ago by ▴ 120
0
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0
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4.3k
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Comment: C: How to get t-statistic values using edgeR?
5.7 years ago Biologist ▴ 120
0
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2
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4.3k
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Comment: C: How to get t-statistic values using edgeR?
5.7 years ago Biologist ▴ 120
8
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5
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4.3k
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How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.7 years ago by 52k • written 5.7 years ago by ▴ 120
0
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0
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3.0k
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Comment: C: EdgeR for differential analysis between two cell lines without replication
6.5 years ago Biologist ▴ 120
3
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8
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3.0k
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EdgeR for differential analysis between two cell lines without replication
edger differential gene expression rnaseq
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 120
0
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1
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3.0k
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Comment: C: EdgeR error for differential analysis between two cell lines
6.5 years ago Biologist ▴ 120
0
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1
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3.0k
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Comment: C: EdgeR error for differential analysis between two cell lines
6.5 years ago Biologist ▴ 120
0
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0
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2.4k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
6.5 years ago Biologist ▴ 120
3
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4
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2.4k
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Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
edgeR r bioconductor diffferential expression fdr
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 120
0
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0
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2.4k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
6.5 years ago Biologist ▴ 120
5
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4
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3.0k
views
Why DESeq2 and edgeR give different results?
deseq2 rnaseq differential gene expression edger
updated 3.6 years ago by 52k • written 6.6 years ago by ▴ 120
0
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0
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3.0k
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Comment: C: Why DESeq2 and edgeR give different results?
6.6 years ago Biologist ▴ 120
0
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0
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3.0k
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Comment: C: Why DESeq2 and edgeR give different results?
6.6 years ago Biologist ▴ 120
0
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1
reply
7.7k
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Comment: C: Filtering step for differential analysis in edgeR
6.6 years ago Biologist ▴ 120
0
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1
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7.7k
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Comment: C: Filtering step for differential analysis in edgeR
6.6 years ago Biologist ▴ 120
0
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1
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7.7k
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Comment: C: Filtering step for differential analysis in edgeR
6.6 years ago Biologist ▴ 120
5
votes
12
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7.7k
views
Filtering step for differential analysis in edgeR
r edger differential gene expression filtering bioconductor
updated 6.7 years ago by 52k • written 6.7 years ago by ▴ 120
0
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1
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7.7k
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Comment: C: Filtering step for differential analysis in edgeR
6.7 years ago Biologist ▴ 120
0
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1
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7.7k
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Comment: C: Filtering step for differential analysis in edgeR
6.7 years ago Biologist ▴ 120
0
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1
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5.3k
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Comment: C: Principle component analysis plot with gene expression data
6.7 years ago Biologist ▴ 120
0
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1
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5.3k
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Comment: C: Principle component analysis plot with gene expression data
6.7 years ago Biologist ▴ 120
3
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6
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5.3k
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Principle component analysis plot with gene expression data
r pca rnaseq edger ggbiplot
updated 6.7 years ago by 67k • written 6.7 years ago by ▴ 120
0
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1
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3.8k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
6.7 years ago Biologist ▴ 120
1
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1
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3.8k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
6.7 years ago Biologist ▴ 120
19
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8
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3.8k
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How to check the read length for all the TCGA data samples in GDC?
gdc tcga wes gdc data
updated 6.7 years ago by 21k • written 6.7 years ago by ▴ 120
0
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0
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3.8k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
6.7 years ago Biologist ▴ 120
0
votes
1
reply
44k
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Comment: C: Differential expression analysis starting from TPM data
6.8 years ago Biologist ▴ 120
0
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1
reply
44k
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Comment: C: Differential expression analysis starting from TPM data
6.8 years ago Biologist ▴ 120
0
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1
reply
1.7k
views
Comment: C: kegga error from edgeR
6.9 years ago Biologist ▴ 120
0
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3
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1.7k
views
kegga error from edgeR
edger r bioconductor pathway analysis kegg
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 120
0
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2
replies
1.3k
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Differential analysis between single sample vs single sample (control vs treatment) with no replicates
r bioconductor limma edger deseq2
updated 7.0 years ago by ★ 28k • written 7.0 years ago by ▴ 120
0
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0
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1.8k
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Comment: C: how to reformat complex list object (derived with TCGAbiolinks)?
7.0 years ago Biologist ▴ 120
1
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3
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4.8k
views
How to select top 10% highly variable genes in microarray data?
r microarray snp6.0 oligo
updated 7.0 years ago by ▴ 360 • written 7.0 years ago by ▴ 120
0
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0
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4.8k
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Comment: C: How to select top 10% highly variable genes in microarray data?
7.0 years ago Biologist ▴ 120
0
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3
replies
1.7k
views
Root installation for xps on cluster
xps root
updated 7.1 years ago by • 0 • written 8.7 years ago by ▴ 120
0
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0
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1.8k
views
Answer: A: TCGABiolinks::GDCquery() suddenly sending back unknown error
7.2 years ago Biologist ▴ 120
1
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3
replies
1.6k
views
How to normalize Microarray expression data?
r affymetrix microarrays normalization bioconductor
updated 7.3 years ago by 67k • written 7.3 years ago by ▴ 120
0
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0
replies
2.8k
views
Comment: C: Why Differential expression results differ with edgeR and limma ?
7.4 years ago Biologist ▴ 120
163 results • Page 1 of 4
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