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7.7k
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Comment: Comment: Does limma calculate pvalues using log2 fold changes or with linear values?
3.1 years ago Sara ▴ 20
0
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0
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2.2k
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Comment: Comment: Too many differentially expressed miRNA with limma
3.1 years ago Sara ▴ 20
6
votes
6
replies
2.2k
views
Too many differentially expressed miRNA with limma
limma miRNA Microarray
3.1 years ago Sara ▴ 20
1
vote
1
reply
1.4k
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip RMA
updated 3.1 years ago by ★ 6.6k • written 3.1 years ago by ▴ 20
0
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1
reply
5.7k
views
Comment: Comment: WGCNA coupled with differential expression analysis: question about baseline mod
4.4 years ago Sara ▴ 20
0
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1
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5.7k
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Comment: Comment: WGCNA coupled with differential expression analysis: question about baseline mod
4.4 years ago Sara ▴ 20
0
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0
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1.5k
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Comment: C: Batch effect and edgeR analysis
6.8 years ago Sara ▴ 20
0
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4
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1.5k
views
Batch effect and edgeR analysis
batch effect edgeR RNA-seq
updated 6.8 years ago by 53k • written 6.8 years ago by ▴ 20
0
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0
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1.5k
views
Comment: C: Batch effect and edgeR analysis
6.8 years ago Sara ▴ 20
0
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0
replies
2.6k
views
Comment: C: Please help with workspace error in R
7.1 years ago Sara ▴ 20
0
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2
replies
2.6k
views
Please help with workspace error in R
R test fisher exact workspace
updated 7.1 years ago by ★ 29k • written 7.1 years ago by ▴ 20
0
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0
replies
1.5k
views
Please help with ballgown problem
ballgown differential expression
8.8 years ago Sara ▴ 20
0
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1
reply
4.7k
views
Comment: C: The common error with ballgown has not been solved!
8.8 years ago Sara ▴ 20
0
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0
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4.7k
views
Comment: C: The common error with ballgown has not been solved!
8.8 years ago Sara ▴ 20
0
votes
1
reply
4.7k
views
Comment: C: The common error with ballgown has not been solved!
8.9 years ago Sara ▴ 20
0
votes
1
reply
4.7k
views
Comment: C: The common error with ballgown has not been solved!
8.9 years ago Sara ▴ 20
0
votes
8
replies
4.7k
views
The common error with ballgown has not been solved!
ballgown software error
updated 8.9 years ago by ▴ 650 • written 8.9 years ago by ▴ 20
0
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1
reply
3.7k
views
Comment: C: Why the log fold change of some genes returned by edgeR is not compatible with t
updated 9.2 years ago by 53k • written 9.2 years ago by ▴ 20
5
votes
5
replies
3.7k
views
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
edgeR logFC FPKM
updated 9.2 years ago by 53k • written 9.2 years ago by ▴ 20
0
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0
replies
4.3k
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Comment: C: Normalization factor in TMM method
9.2 years ago Sara ▴ 20
0
votes
1
reply
4.3k
views
Comment: C: Normalization factor in TMM method
9.2 years ago Sara ▴ 20
5
votes
4
replies
4.3k
views
Normalization factor in TMM method
TMM normalization edgeR
updated 9.2 years ago by 68k • written 9.2 years ago by ▴ 20
0
votes
1
reply
3.2k
views
Comment: C: About differentially expressed genes that found by edgeR
9.4 years ago Sara ▴ 20
0
votes
1
reply
3.2k
views
Comment: C: About differentially expressed genes that found by edgeR
9.4 years ago Sara ▴ 20
0
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0
replies
2.5k
views
Comment: C: Please share me your helpful comments with edgeR analysis without replicate
9.4 years ago Sara ▴ 20
0
votes
1
reply
3.2k
views
Comment: C: About differentially expressed genes that found by edgeR
9.4 years ago Sara ▴ 20
0
votes
2
replies
2.5k
views
Comment: C: Please share me your helpful comments with edgeR analysis without replicate
updated 9.4 years ago by 53k • written 9.4 years ago by ▴ 20
2
votes
7
replies
3.2k
views
About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 20
0
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0
replies
2.5k
views
Comment: C: Please share me your helpful comments with edgeR analysis without replicate
9.4 years ago Sara ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: Please share me your helpful comments with edgeR analysis without replicate
9.4 years ago Sara ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: Please share me your helpful comments with edgeR analysis without replicate
9.4 years ago Sara ▴ 20
4
votes
15
replies
2.5k
views
Please share me your helpful comments with edgeR analysis without replicate
edgeR dispersion value replication
updated 9.4 years ago by 53k • written 9.4 years ago by ▴ 20
0
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1
reply
2.5k
views
Comment: C: Please share me your helpful comments with edgeR analysis without replicate
9.4 years ago Sara ▴ 20
0
votes
2
replies
2.5k
views
Answer: A: Please share me your helpful comments with edgeR analysis without replicate
9.4 years ago Sara ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: Please help with estimating dispersion value using housekeeping genes in edgeR
9.4 years ago Sara ▴ 20
1
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3
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1.5k
views
Please help with estimating dispersion value using housekeeping genes in edgeR
estimate dispersion value edgeR Houskeeping genes
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 20
0
votes
0
replies
3.8k
views
Comment: C: Why Pathview shows just red color (up-regulated genes) on a pathway?
9.5 years ago Sara ▴ 20
2
votes
2
replies
3.8k
views
Why Pathview shows just red color (up-regulated genes) on a pathway?
Pathview pathway analysis differential gene expression
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: Please help with pathway analysis using Pathview
9.5 years ago Sara ▴ 20
1
vote
2
replies
2.7k
views
Please help with pathway analysis using Pathview
pathview pathway analysis
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 20
0
votes
0
replies
6.4k
views
Comment: C: Please help me with the error of " installation of package had non-zero exit sta
9.5 years ago Sara ▴ 20
0
votes
1
reply
6.4k
views
Comment: C: Please help me with the error of " installation of package had non-zero exit sta
9.5 years ago Sara ▴ 20
0
votes
4
replies
6.4k
views
Please help me with the error of " installation of package had non-zero exit status"
bioconductor r packages installation
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 20
0
votes
1
reply
19k
views
Comment: C: edgeR normalization method
9.8 years ago Sara ▴ 20
8
votes
3
replies
19k
views
edgeR normalization method
edgeR differential expression normalization
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 20
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