Biostar R packages

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r packages centos7 bioclite libxml2

updated 4.7 years ago by Pariksheet Nanda ▴ 110 • written 4.7 years ago by kai.karius ▴ 10

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r packages somaticsignatures variantannotation

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by solo7773 ▴ 10

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505

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R annotation bioconductor r packages

5.9 years ago mcaulfield • 0

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bioconductor r packages installation

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by Sara ▴ 10

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website r packages importing

6.1 years ago george.carlisle • 0

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r packages submission

6.3 years ago Jurat Shahidin ▴ 70

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Bioconductor biocLite R packages oldversion

6.5 years ago svlachavas ▴ 780

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Comment: Variance explained (coefficient of determination) in edgeR by Gordon Smyth 45k

No, you have it wrong way around. If you want deviance explained by x1, then you need ``` R2_x1 <- ( deviance without x1 in model - devia…

Comment: Variance explained (coefficient of determination) in edgeR by Gemma • 0

Many thanks for your answer. To clarify the last point, `R2_nox1` is the proportion of the deviance explained when considering `design.no…

Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by Rory Stark ★ 4.4k

The latest version, `DiffBind_3.6.1`, contains fixes for these issues. You will get these fixes if you upgrade to `R_4.2.0` and `Bioconduct…

Comment: Variance explained (coefficient of determination) in edgeR by Gordon Smyth 45k

The R2 values look completely normal. The median R2 is 10%, which seems somewhat low rather than high. With so many genes, you will natural…

Comment: Variance explained (coefficient of determination) in edgeR by Gemma • 0

Many thanks, that seems to work! However, the estimates tend to be surprisingly high, for many genes R2 being close to 1 (quartiles being…

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Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0

Answer: Use MulticoreParam under BatchtoolsParam

Answer: Variance explained (coefficient of determination) in edgeR

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Popular Question to Johannes Rainer ★ 1.9k