Biostar R packages

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r packages centos7 bioclite libxml2

updated 4.0 years ago by Pariksheet Nanda ▴ 110 • written 4.0 years ago by kai.karius ▴ 10

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808

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r packages somaticsignatures variantannotation

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by solo7773 ▴ 10

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454

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R annotation bioconductor r packages

5.2 years ago mcaulfield • 0

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4.3k

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bioconductor r packages installation

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by Sara • 0

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1.2k

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website r packages importing

5.5 years ago • updated 5.4 years ago george.carlisle • 0

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978

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r packages submission

5.6 years ago Jurat Shahidin ▴ 70

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5.2k

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Bioconductor biocLite R packages oldversion

5.8 years ago svlachavas ▴ 780

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Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k

The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k

The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …

Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850

Cross posted at Biostars: https://www.biostars.org/p/9490151/

Comment: error: cannot execute 'f951': execvp: No such file or directory when downloading by ATpoint ▴ 840

What is the output of `which f951`? It is a M1 Mac, is it?

Votes

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2

Answer: Log fold change interpretation of time series with Wald test

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Popular Question to Hans-Ulrich Klein ▴ 330