Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
fold change
•
reset
5
votes
14
replies
6.3k
views
Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 3.0 years ago by
ATpoint
★ 4.8k • written 6.8 years ago by
Beginner
▴ 60
1
vote
2
replies
2.8k
views
diffBind report Fold scale
diffBind
Fold Change
updated 4.0 years ago by
Joe Nicholas
• 0 • written 6.3 years ago by
joseluis.ruiz
• 0
2
votes
4
replies
1.7k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
ilovesuperheroes1993
• 0
0
votes
0
replies
1.2k
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.8 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.7k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Arindam
▴ 80
0
votes
1
reply
1.7k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 8.7 years ago by
Gordon Smyth
52k • written 8.7 years ago by
Claudia
▴ 10
2
votes
7
replies
2.9k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 8.7 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
Sara
▴ 20
7 results • Page
1 of 1
Recent ...
Replies
Comment: FlowSOM library requires igraph but igraph does not install
by
Szabolcs
• 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Kinnary
▴ 20
Thank you very much for the vis suggestion!
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Kinnary
▴ 20
Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Kinnary
▴ 20
Thank you very much - this is very clear!
Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
by
Michael Love
43k
I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then theā¦
Votes
Comment: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
Awards
• All
Popular Question
to
Szabolcs
• 0
Popular Question
to
Gordon Smyth
52k
Popular Question
to
shepherl
4.1k
Popular Question
to
Mengjun
• 0
Popular Question
to
James W. MacDonald
68k
Locations
• All
Australia/Melbourne/Monash University Genomics and Bioinformatics Platform,
40 minutes ago
WEHI, Melbourne, Australia,
43 minutes ago
Germany,
1 hour ago
Canada,
1 hour ago
United States,
2 hours ago
Traffic: 538 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6