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fold change
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5
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 2.2 years ago by
ATpoint
★ 4.2k • written 6.0 years ago by
Beginner
▴ 60
1
vote
2
replies
2.3k
views
diffBind report Fold scale
diffBind
Fold Change
updated 3.2 years ago by
Joe Nicholas
• 0 • written 5.5 years ago by
joseluis.ruiz
• 0
2
votes
4
replies
1.4k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
ilovesuperheroes1993
• 0
0
votes
0
replies
984
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.1 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.4k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.4 years ago by
James W. MacDonald
66k • written 6.4 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.6k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 7.9 years ago by
Gordon Smyth
51k • written 7.9 years ago by
Claudia
▴ 10
2
votes
7
replies
2.5k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 8.0 years ago by
Ryan C. Thompson
★ 7.9k • written 8.0 years ago by
Sara
▴ 10
7 results • Page
1 of 1
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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