Bioconductor Fold change

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6.3k

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R deseq2 edger differential gene expression fold change

updated 3.0 years ago by ATpoint ★ 4.8k • written 6.8 years ago by Beginner ▴ 60

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2.8k

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diffBind Fold Change

updated 4.0 years ago by Joe Nicholas • 0 • written 6.3 years ago by joseluis.ruiz • 0

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1.7k

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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1.2k

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mfuzz fold change log2 STANDARDISATION

6.8 years ago prakashpandey1111 • 0

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1.7k

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ballgown stattest fold change

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Arindam ▴ 80

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1.7k

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logfc limma fold change

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by Claudia ▴ 10

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2.9k

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edgeR DE analysis fold change cpm

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sara ▴ 20

7 results • Page 1 of 1

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Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - this is very clear!

Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov by Michael Love 43k

I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…

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Comment: edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

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