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Showing :
questions
6
votes
6
replies
1.4k
views
Too many differentially expressed miRNA with limma
limma
miRNA
Microarray
17 months ago
Sara
▴ 10
1
vote
1
reply
762
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip
RMA
updated 17 months ago by
Mike Smith
★ 6.5k • written 17 months ago by
Sara
▴ 10
0
votes
4
replies
1.0k
views
Batch effect and edgeR analysis
batch effect
edgeR
RNA-seq
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
Sara
▴ 10
0
votes
2
replies
1.4k
views
Please help with workspace error in R
R
test fisher exact
workspace
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
Sara
▴ 10
0
votes
0
replies
1.3k
views
Please help with ballgown problem
ballgown
differential expression
7.2 years ago
Sara
▴ 10
0
votes
8
replies
3.8k
views
The common error with ballgown has not been solved!
ballgown
software error
updated 7.2 years ago by
Jeff Leek
▴ 650 • written 7.2 years ago by
Sara
▴ 10
5
votes
5
replies
2.9k
views
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
edgeR
logFC
FPKM
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
Sara
▴ 10
5
votes
4
replies
3.2k
views
Normalization factor in TMM method
TMM
normalization
edgeR
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
Sara
▴ 10
2
votes
7
replies
2.4k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 7.7 years ago by
Ryan C. Thompson
★ 7.9k • written 7.7 years ago by
Sara
▴ 10
4
votes
15
replies
1.6k
views
Please share me your helpful comments with edgeR analysis without replicate
edgeR
dispersion value
replication
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
Sara
▴ 10
1
vote
3
replies
1.1k
views
Please help with estimating dispersion value using housekeeping genes in edgeR
estimate dispersion value
edgeR
Houskeeping genes
updated 7.8 years ago by
Ryan C. Thompson
★ 7.9k • written 7.8 years ago by
Sara
▴ 10
2
votes
2
replies
3.0k
views
Why Pathview shows just red color (up-regulated genes) on a pathway?
Pathview
pathway analysis
differential gene expression
updated 7.9 years ago by
Luo Weijun
★ 1.6k • written 7.9 years ago by
Sara
▴ 10
1
vote
2
replies
1.9k
views
Please help with pathway analysis using Pathview
pathview
pathway analysis
updated 7.9 years ago by
Luo Weijun
★ 1.6k • written 7.9 years ago by
Sara
▴ 10
0
votes
4
replies
5.6k
views
Please help me with the error of " installation of package had non-zero exit status"
bioconductor
r packages
installation
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
Sara
▴ 10
7
votes
3
replies
15k
views
edgeR normalization method
edgeR
differential expression
normalization
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
Sara
▴ 10
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