Bioconductor Forum

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clusterProfiler

updated 2 days ago by Javier • 0 • written 6 months ago by inna.gur • 0

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396

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ensembldb genomei GenomeInfoDb

written 3 months ago by Kai Hu ▴ 70

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913

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ChIPpeakAnno DiffBind

written 8 months ago by Chris ▴ 10

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1.6k

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GenomeInfoDbData genomeinfodbdata

updated 3 days ago by merv ▴ 120 • written 9 months ago by 15753563659 ▴ 60

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MethylationEPICv2.0 conumee

updated 22 hours ago by Maximus • 0 • written 14 months ago by luca.s ▴ 50

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1.8k

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slingshot plot3d.SlingshotDataSet

updated 3 days ago by Kelly Street • 0 • written 23 months ago by manduchi ▴ 10

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762

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ENmix IlluminaHumanMethylationEPICmanifest

updated 5 days ago by James W. MacDonald 66k • written 2.0 years ago by Daphna • 0

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1.0k

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BayesSpace

written 3.1 years ago by aspangl1 ▴ 30

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735

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noiseq RNA-seq quality control

updated 4 days ago by baptiste.bidon • 0 • written 4.8 years ago by ag1805x ▴ 80

59 results • Page 2 of 2

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Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Answer: GSVA function by Robert Castelo ★ 3.3k

Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …

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DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DESeq2: add annotations (from data frame) to DESeqDataSet

Add new columns to DESeqResults from text file by matching rownames.

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Popular Question to Robert Castelo ★ 3.3k