Bioconductor Genomeinfodbdata

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128

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GenomeInfoDb GenomeInfoDbData

updated 3 months ago by ATpoint ★ 2.9k • written 3 months ago by exferin • 0

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715

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GenomeInfoDbData microbiome phyloseq

updated 9 months ago by Marcel Ramos 660 • written 10 months ago by kikiki • 0

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2.3k

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DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus

updated 8 months ago by wshao9 • 0 • written 11 months ago by JoseR • 0

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667

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GenomeInfoDb GenomeInfoDbData GenomicDistributionsData GenomicDistributions

11 months ago rashford • 0

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1.2k

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GenomeInfoDbData phyloseq dada2

16 months ago ymtan • 0

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2.6k

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GenomeInfoDbData

2.1 years ago ettore64 ▴ 10

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3.2k

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GenomeInfoDbData "GenomeInfoDbData"package

updated 15 months ago by Hervé Pagès 16k • written 2.6 years ago by N.D.Hubot • 0

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650

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install GenomeInfoDbData

updated 3.1 years ago by James W. MacDonald 63k • written 3.1 years ago by lina.bird • 0

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442

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genomeinfodbdata

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by hdwhitti • 0

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1.5k

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software error ballgown genomeinfodbdata genomeinfodb

updated 4.7 years ago by James W. MacDonald 63k • written 4.7 years ago by dualeahmed • 0

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1.1k

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bioconductor GenomeInfoDbData

4.9 years ago svetlana.gorokhova • 0

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15k

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dada2 GenomeInfoDbData

updated 5.9 years ago by jiangjing_ing • 0 • written 6.0 years ago by navlern • 0

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Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

See above, you want the sites where `Fold > 0`.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

That does seem like you have a very high number of open chromatin sites changing. How many are in the consensus matrix? You can see how ma…

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

I can see the confusion here as one color is being used in two different ways. The dark blue/purple color is used for the bars on the left…

Comment: P-value histogram of testLinearModel is not uniform by ATpoint ★ 2.9k

The work from @csoneson (https://pubmed.ncbi.nlm.nih.gov/29481549/) points out that for scRNA-seq a good prefiltering improves DE reliabili…

Answer: Diffbind "No genome detected" by Rory Stark ★ 4.9k

In this case, `DiffBind` is unable to automatically determine the genome from the supplied Input bam file. You should be able to specify `g…

Votes

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Answer: P-value histogram of testLinearModel is not uniform

Answer: Interpret plot from DiffBind

C: Minimum number of samples per treatment/group for WGCNA analysis

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Popular Question to rodrigo.duarte88 ▴ 30

Scholar to Rory Stark ★ 4.9k