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noiseq
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1
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335
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
9 months ago
Pratibha
▴ 10
0
votes
2
replies
589
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 2.2 years ago by
ATpoint
★ 2.3k • written 2.2 years ago by
Themis
• 0
3
votes
6
replies
1.0k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 14 months ago by
Michael Love
39k • written 2.5 years ago by
andreia
▴ 10
0
votes
0
replies
406
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
3.6 years ago
ag1805x
▴ 50
0
votes
0
replies
388
views
NOISeq 'readData' not writing correctly
software error
NOISeq
3.7 years ago
jledmondson
• 0
0
votes
1
reply
513
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
3.8 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
616
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
4.9 years ago
Aurora
▴ 20
0
votes
0
replies
665
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
5.1 years ago
aokoro
• 0
0
votes
0
replies
1.1k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
5.5 years ago
Luiz
• 0
0
votes
3
replies
1.2k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 5.6 years ago by
James W. MacDonald
62k • written 5.6 years ago by
Mau
▴ 20
0
votes
5
replies
3.0k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 5.9 years ago by
Michael Love
39k • written 5.9 years ago by
glmazzo
• 0
0
votes
0
replies
1.1k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
7.4 years ago
lina.faller
• 0
0
votes
0
replies
828
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
10.1 years ago
Guest User
★ 12k
0
votes
2
replies
2.3k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 10.4 years ago by
Dan Tenenbaum
★ 8.2k • written 10.4 years ago by
Guest User
★ 12k
0
votes
4
replies
1.6k
views
NOISeq installation error
NOISeq
NOISeq
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
931
views
NOISeq-real input parameters
NOISeq
NOISeq
11.0 years ago
Guest User
★ 12k
16 results • Page
1 of 1
Recent ...
Replies
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
tahir.msajid
• 0
Hi Rory, I came up with another question while analyzing my data. A scenario of analysis: Path to bam files, path to peaks files (broad pe…
Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
by
Yang Shi
▴ 10
Thanks for your reply sir! Here is the data ([EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv][1]). And there is the data process…
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
by
davidhillis
• 0
Thank you!
Comment: Time-course, comparison of two groups
by
boczniak767
▴ 720
Thank you Gordon for your time and patience, I'd try to be more specific. I've read carefully the three first chapters of `edgeR` user guid…
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
by
James W. MacDonald
62k
This works for me. ``` > library(VariantAnnotation) > library(TxDb.Hsapiens.UCSC.hg19.knownGene) > txdb <- TxDb.Hsapiens.UCSC.hg19.knownGe…
Votes
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
A: Pathway analysis of differentially methylated CpGs
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
Answer: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
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