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noiseq
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227
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 4 months ago by
ATpoint
★ 3.6k • written 4 months ago by
Rutuja
• 0
1
vote
1
reply
595
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
18 months ago
Pratibha
▴ 10
0
votes
2
replies
813
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.0 years ago by
ATpoint
★ 3.6k • written 3.0 years ago by
Themis
• 0
3
votes
6
replies
1.4k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 22 months ago by
Michael Love
41k • written 3.2 years ago by
andreia
▴ 10
0
votes
0
replies
593
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
4.3 years ago
ag1805x
▴ 80
0
votes
0
replies
532
views
NOISeq 'readData' not writing correctly
software error
NOISeq
4.4 years ago
jledmondson
• 0
0
votes
1
reply
687
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
4.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
818
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
5.6 years ago
Aurora
▴ 20
0
votes
0
replies
891
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
5.9 years ago
aokoro
• 0
0
votes
0
replies
1.4k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.2 years ago
Luiz
• 0
0
votes
3
replies
1.4k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 6.3 years ago by
James W. MacDonald
64k • written 6.3 years ago by
Mau
▴ 50
0
votes
5
replies
3.4k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 6.6 years ago by
Michael Love
41k • written 6.6 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.2k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
8.1 years ago
lina.faller
• 0
0
votes
0
replies
928
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
10.8 years ago
Guest User
★ 12k
0
votes
2
replies
2.5k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 11.2 years ago by
Dan Tenenbaum
★ 8.2k • written 11.2 years ago by
Guest User
★ 12k
0
votes
4
replies
1.8k
views
NOISeq installation error
NOISeq
NOISeq
updated 11.2 years ago by
Sean Davis
21k • written 11.2 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.1k
views
NOISeq-real input parameters
NOISeq
NOISeq
11.7 years ago
Guest User
★ 12k
17 results • Page
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Comment: Correct the batch effect in methylation analysis in R
by
Gordon Smyth
49k
> Is it okay to apply removeBatchEffect before a limma analysis(limma linear model)? No, you should not apply any batch correction before …
Comment: Correct the batch effect in methylation analysis in R
by
kyj2226
• 0
Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…
Answer: Correct the batch effect in methylation analysis in R
by
Gordon Smyth
49k
You should not apply batch correction functions like harman before a limma analysis. Instead, just add `batch` to the limma linear model. …
Answer: Agilent Microarray Gene Oncology analysis gone wrong
by
Gordon Smyth
49k
Your use of `coef=1` is incorrect, for reasons explained in the limma User's Guide. If you had simply left `coef` at the default, then thin…
Comment: Normalised counts from RUVg in RUVSeq
by
Shaimaa Gamal
• 0
Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …
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Answer: Correct the batch effect in methylation analysis in R
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
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