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14
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Deseq2. decontXcounts not integers. Useful alternative?
DESeq2
celda
7 hours ago
JalapenoCornbread
• 0
0
votes
6
replies
85
views
Math expression in shapeCustom legend in EnhancedVolcano
EnhancedVolcano
updated 5 hours ago by
James W. MacDonald
65k • written 9 hours ago by
pl23
• 0
2
votes
9
replies
198
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 7 hours ago by
James W. MacDonald
65k • written 14 hours ago by
Alexandre
• 0
0
votes
0
replies
28
views
One error problem occurred caused by data type during using GDCprepare to handle BRCA data
GDCRNATools
TCGA
19 hours ago
glaciya2018
• 0
1
vote
2
replies
88
views
Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
1 day ago • updated 19 hours ago
ATpoint
★ 4.0k
0
votes
1
reply
55
views
PCA plot suggestions
DESeq2
PCAtools
updated 13 hours ago by
JKim
• 0 • written 23 hours ago by
Aaliya
• 0
2
votes
5
replies
143
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 11 hours ago by
James W. MacDonald
65k • written 2 days ago by
bandconductor
• 0
1
vote
3
replies
128
views
Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
updated 14 hours ago by
James W. MacDonald
65k • written 1 day ago by
winwater0928
• 0
0
votes
8
replies
234
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 22 hours ago by
swbarnes2
★ 1.3k • written 2 days ago by
Aaliya
• 0
0
votes
2
replies
116
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
2 days ago • updated 21 hours ago
shuwangxinze1996
• 0
10 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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