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replies
1.7k
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Question concerning Diffbind
Normalization
GO
edgeR
DiffBind
Normalization
GO
edgeR
DiffBind
12.9 years ago
Rory Stark
★ 5.2k
0
votes
1
reply
981
views
Creating annotation database for GOstat
Annotation
GO
Annotation
GO
updated 12.9 years ago by
James W. MacDonald
68k • written 12.9 years ago by
Naomi Altman
★ 6.0k
0
votes
6
replies
2.5k
views
Log transformation and left censoring
limma
edgeR
DESeq
limma
edgeR
DESeq
updated 12.9 years ago by
Gordon Smyth
53k • written 12.9 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
1.4k
views
rGADEM: e-Values for reported motifs
rGADEM
rGADEM
12.9 years ago
Alexandra Zerck
▴ 10
0
votes
2
replies
2.8k
views
annotation for Agilent Mouse an d Human 8x60K array
Annotation
Annotation
updated 12.9 years ago by
Marc Carlson
★ 7.2k • written 12.9 years ago by
marco fabbri
▴ 320
0
votes
2
replies
1.4k
views
Rtracklayer and track/table names
rtracklayer
rtracklayer
12.9 years ago
Gustavo Fernández Bayón
▴ 440
0
votes
5
replies
3.1k
views
GSVA error
GSVA
GSVA
updated 12.9 years ago by
Robert Castelo
★ 3.4k • written 12.9 years ago by
Guest User
★ 13k
0
votes
4
replies
1.3k
views
DEXseq: several "1" and "NA" in padjust column
DEXSeq
DEXSeq
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Vincenzo Capece
▴ 140
0
votes
0
replies
1.6k
views
how to supply a vector/list of results to GenTable in topGO?
GO
PROcess
topGO
GO
PROcess
topGO
12.9 years ago
Adrian Alexa
▴ 400
0
votes
0
replies
1.4k
views
BitSeq: Required input for 3' bias correction on transcripts.
Transcription
RNASeq
safe
BitSeq
Transcription
RNASeq
safe
BitSeq
12.9 years ago
Peter Glaus
▴ 70
0
votes
1
reply
1.2k
views
graph::subGraph() problem with node attributes
graph
graph
updated 12.9 years ago by
Valerie Obenchain
★ 6.8k • written 12.9 years ago by
Robert Castelo
★ 3.4k
0
votes
4
replies
3.1k
views
Getting Introns Expression at a Per Gene Level
Annotation
Annotation
updated 12.9 years ago by
Valerie Obenchain
★ 6.8k • written 12.9 years ago by
Fong Chun Chan
▴ 320
0
votes
1
reply
1.6k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 12.9 years ago by
Martin Morgan
25k • written 12.9 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
684
views
Differential Expression analysis
12.9 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
rhdf5 and factors
GO
GLAD
GO
GLAD
12.9 years ago
Stephen Eglen
▴ 10
1
vote
1
reply
1.6k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR
ReadqPCR
qPCR
ReadqPCR
12.9 years ago
boczniak767
▴ 740
0
votes
2
replies
1.5k
views
LogFC query in Limma
Pathways
Cancer
probe
limma
convert
Pathways
Cancer
probe
limma
convert
updated 12.9 years ago by
Gordon Smyth
53k • written 12.9 years ago by
Roopa Subbaiaih
▴ 130
1
vote
2
replies
1.8k
views
What does this mean in Limma?
limma
limma
updated 12.9 years ago by
Gordon Smyth
53k • written 12.9 years ago by
Cittaro Davide
▴ 240
0
votes
3
replies
2.0k
views
Getting DESEq results on just one gene
DESeq
DESeq
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Fong Chun Chan
▴ 320
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 70 mart databases
genomes
genomes
12.9 years ago
Thomas Maurel
▴ 800
0
votes
2
replies
1.4k
views
transcriptDb object not found when call locateVariants() in a function
12.9 years ago
sun
▴ 100
0
votes
1
reply
1.3k
views
DEXSeq package - read.HTSeqCount function error
Annotation
DEXSeq
Annotation
DEXSeq
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Matteo Carrara
▴ 20
0
votes
2
replies
950
views
Accessing Bioconductor from Java
updated 12.9 years ago by
Michael Lawrence
★ 11k • written 12.9 years ago by
SHARANYA RAGHUNATH
▴ 10
0
votes
0
replies
1.2k
views
Log transformation and left censoring
limma
safe
edgeR
limma
safe
edgeR
12.9 years ago
Paul Harrison
▴ 110
0
votes
6
replies
3.8k
views
LogFC query in Limma
Pathways
convert
Pathways
convert
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Roopa Subbaiaih
▴ 130
0
votes
3
replies
1.3k
views
VariantAnnotation: fine define Locating variants in and around genes
SNP
VariantAnnotation
VariantAnnotation
SNP
VariantAnnotation
VariantAnnotation
updated 12.9 years ago by
Valerie Obenchain
★ 6.8k • written 12.9 years ago by
Fabrice Tourre
▴ 970
0
votes
0
replies
1.0k
views
Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRanges
GO
IRanges
GO
IRanges
12.9 years ago
Stephanie M. Gogarten
▴ 890
0
votes
1
reply
1.8k
views
statistical test for time course data
updated 12.9 years ago by
Richard Friedman
★ 2.0k • written 12.9 years ago by
chris Jhon
▴ 260
0
votes
3
replies
1.5k
views
DEXSeq: building exon count set
DESeq
DEXSeq
DESeq
DEXSeq
updated 12.9 years ago by
Alejandro Reyes
★ 1.9k • written 12.9 years ago by
Vincenzo Capece
▴ 140
1
vote
2
replies
3.9k
views
mm10 goseq supported genome
annotate
goseq
annotate
goseq
updated 12.9 years ago by
Nadia Davidson
▴ 320 • written 12.9 years ago by
Vincenzo Capece
▴ 140
0
votes
2
replies
2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 12.9 years ago by
Martin Morgan
25k • written 12.9 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
1
reply
968
views
SNPlocs -> VCF or similar
convert
convert
updated 12.9 years ago by
Hervé Pagès
16k • written 12.9 years ago by
Michael Lawrence
★ 11k
1
vote
5
replies
5.5k
views
DiffBind error
Alignment
DiffBind
Alignment
DiffBind
updated 12.9 years ago by
Rory Stark
★ 5.2k • written 12.9 years ago by
José Luis Lavín
▴ 280
0
votes
1
reply
1.1k
views
Getting Introns Expression at a Per Gene Level
updated 12.9 years ago by
Valerie Obenchain
★ 6.8k • written 12.9 years ago by
Fong Chun Chan
▴ 320
0
votes
0
replies
2.6k
views
Open PhD and PostDoc Position in Bioinformatics at Goethe University, Frankfurt, Germany
12.9 years ago
Stefanie
▴ 360
0
votes
0
replies
1.5k
views
FlowCore - reading in flowSets
FlowCytometry
PROcess
flowCore
FlowCytometry
PROcess
flowCore
12.9 years ago
Pieter Coussement
▴ 30
0
votes
2
replies
2.3k
views
FlowCore - read.flowSet
updated 12.9 years ago by
Jiang, Mike
★ 1.3k • written 12.9 years ago by
Pieter Coussement
▴ 30
0
votes
0
replies
1.1k
views
how to supply a vector/list of results to GenTable in topGO?
topGO
topGO
12.9 years ago
Aaron Mackey
▴ 170
0
votes
2
replies
1.8k
views
flowCore log transformation
flowCore
flowCore
updated 12.9 years ago by
Jiang, Mike
★ 1.3k • written 12.9 years ago by
Pieter Coussement
▴ 30
0
votes
1
reply
978
views
Question about model design in limma
limma
limma
updated 12.9 years ago by
James W. MacDonald
68k • written 12.9 years ago by
Tim.Peters@csiro.au
▴ 10
0
votes
1
reply
1.8k
views
Meaning of Median and IQR in MA-Plot, Affy Package
updated 12.9 years ago by
Sean Davis
21k • written 12.9 years ago by
Gundala Viswanath
▴ 230
0
votes
8
replies
3.0k
views
Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRanges
GenomicRanges
GenomicRanges
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Peter Hickey
▴ 760
0
votes
2
replies
1.3k
views
DEXSeq and parallel, orphan processes.
GO
DEXSeq
GO
DEXSeq
updated 12.9 years ago by
Alejandro Reyes
★ 1.9k • written 12.9 years ago by
Bin Ye
▴ 30
0
votes
1
reply
1.2k
views
DEXSeq package - read.HTSeqCount function error
DEXSeq
DEXSeq
updated 12.9 years ago by
Alejandro Reyes
★ 1.9k • written 12.9 years ago by
Matteo Carrara
▴ 20
0
votes
2
replies
2.3k
views
KEGGgraph problem
KEGGgraph
KEGGgraph
updated 12.9 years ago by
Zhang, Jitao David
▴ 120 • written 12.9 years ago by
Guest User
★ 13k
0
votes
0
replies
1.0k
views
marray maQualityPlots error
12.9 years ago
Pavlík Vojtěch
▴ 10
0
votes
12
replies
2.4k
views
how to understand the concept metadata in bioconductor
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
wang peter
★ 2.0k
0
votes
2
replies
2.5k
views
KEGG REST: retrieving genes
updated 12.9 years ago by
Dan Tenenbaum
★ 8.2k • written 12.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
1.7k
views
Problems in running easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
updated 12.9 years ago by
delhomme@embl.de
★ 1.2k • written 12.9 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Reading CEL files in using BufferedMatrix.justRMA
BufferedMatrix
BufferedMatrix
12.9 years ago
Emma Reick
▴ 10
46,699 results • Page
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Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
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For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
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53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
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