0
votes
0
replies
1.0k
views
Error - BSgenomeForge function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
12.9 years ago Hervé Pagès 16k
0
votes
2
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1.6k
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BSgenome forging - Node stack overflow
BSgenome BSgenome BSgenome BSgenome
updated 12.9 years ago by 16k • written 12.9 years ago by ▴ 40
0
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2
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1.4k
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cummeRbund masks featureNames and samples from Biobase
Biobase cummeRbund Biobase cummeRbund
updated 12.9 years ago by 25k • written 12.9 years ago by ★ 13k
1
vote
0
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1.2k
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GO graphs made with topGO are unreadable
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12.9 years ago Guest User ★ 13k
0
votes
1
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1.3k
views
DEXSeq: problem with dexseq_prepare_annotation.py
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updated 12.9 years ago by ★ 3.8k • written 12.9 years ago by ▴ 10
0
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0
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980
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
12.9 years ago Julie Zhu ★ 4.3k
0
votes
0
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Comparing human and mouse expression directly with RankProd
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12.9 years ago Cornwell, Adam ▴ 110
0
votes
5
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1.5k
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 40
0
votes
2
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Difficulties in using the mgsa package for Gene Set Analysis
GO rat2302 Category mgsa GO rat2302 Category mgsa
updated 12.9 years ago by ▴ 60 • written 12.9 years ago by ★ 13k
0
votes
1
reply
1.6k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 60
0
votes
2
replies
1.6k
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annmap installation window
annmap annmap
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ★ 13k
0
votes
2
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1.8k
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geneid to gene name conversion
VariantAnnotation convert biomaRt VariantAnnotation VariantAnnotation convert biomaRt
updated 12.9 years ago by ▴ 750 • written 12.9 years ago by ▴ 10
0
votes
1
reply
1.2k
views
DNA motif sequence prediction - finding a method to compare with
updated 12.9 years ago by ▴ 750 • written 12.9 years ago by ▴ 10
0
votes
0
replies
998
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lowest common ancestor
12.9 years ago Alyaa Mahmoud ▴ 440
1
vote
16
replies
2.7k
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error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 420
0
votes
1
reply
1.6k
views
DESeq - working with more than 2 conditions
DESeq DESeq
updated 12.9 years ago by ★ 3.8k • written 12.9 years ago by ▴ 20
0
votes
4
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1.6k
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Methods for time course gene expression analysis in an observational cohort
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12.9 years ago Oliver Hofmann ▴ 50
0
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0
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[PATCH] Fix options in GSVA
Annotation GSVA Annotation GSVA
12.9 years ago Robert Castelo ★ 3.4k
0
votes
21
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BAM files to Genomic Ranges object
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updated 2.1 years ago by • 0 • written 13.0 years ago by ▴ 280
0
votes
3
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edgeR logFC
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 210
0
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2
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 12.9 years ago by ▴ 440 • written 12.9 years ago by ★ 13k
0
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3
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3.3k
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[GSVA] Segfault with GSVA
RNASeq Microarray Annotation gcrma convert GSVA RNASeq Microarray Annotation gcrma GSVA
updated 12.9 years ago by ▴ 230 • written 12.9 years ago by ★ 3.4k
0
votes
2
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1.3k
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rtracklayer: small problem
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updated 12.9 years ago by ★ 11k • written 12.9 years ago by ▴ 440
0
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3
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2.3k
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Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 12.9 years ago by 16k • written 12.9 years ago by ▴ 40
0
votes
2
replies
2.0k
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xps installation question
xps xps
updated 12.9 years ago by ★ 3.9k • written 12.9 years ago by ▴ 450
0
votes
0
replies
1.2k
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Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
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12.9 years ago Christina Chaivorapol ▴ 40
0
votes
3
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1.7k
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VCF predictCoding(...) providing inconsistent results?
genomes genomes
12.9 years ago Murat Tasan ▴ 70
0
votes
0
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1.2k
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[OT] Job Opening: Bioinformatician at OpenAnalytics (Belgium)
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12.9 years ago Tobias Verbeke ▴ 50
0
votes
3
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2.2k
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Using fRMA with "alternative" CDF files
Normalization cdf frma Normalization cdf frma
updated 12.9 years ago by ▴ 830 • written 13.0 years ago by ▴ 110
0
votes
3
replies
2.5k
views
ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25, genome=Mmusculus)
12.9 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.2k
views
Problems with mapping chromosomal probe locations for illumina probes ?!
probe probe
updated 12.9 years ago by ▴ 50 • written 12.9 years ago by ▴ 90
0
votes
3
replies
6.0k
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limma design and contrast matrix for paired experiment
Microarray limma edgeR Microarray limma edgeR
12.9 years ago Gordon Smyth 53k
0
votes
7
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3.5k
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paper - download - pubmed
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updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 300
0
votes
1
reply
1.4k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 12.9 years ago by 21k • written 12.9 years ago by ▴ 10
0
votes
3
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3.1k
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seqlevels in VCF objects
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 70
0
votes
2
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question of justRMA on exon array
cdf affy cdf affy
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 450
0
votes
1
reply
1.2k
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BeadArray
illuminaHumanv2 illuminaHumanv2
updated 12.9 years ago by ★ 1.1k • written 12.9 years ago by ▴ 10
0
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0
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KEGGREST package is available in devel
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12.9 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
915
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Basic ExpressionSet problems
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updated 12.9 years ago by 21k • written 12.9 years ago by ▴ 90
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3
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Gene Ontology: Shortest path from root to node
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updated 12.9 years ago by ★ 7.2k • written 12.9 years ago by ★ 13k
0
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2
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phenoTest and variable-wise multiple testing
phenoTest phenoTest
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 90
0
votes
1
reply
1.2k
views
Nucleotide percentages?
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 50
0
votes
0
replies
685
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Coercing Agilent two colour microarray data into CHARM
12.9 years ago Guest User ★ 13k
0
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0
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1.6k
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Plotting Broad HMM states in Gviz
Gviz Gviz
12.9 years ago Guest User ★ 13k
0
votes
4
replies
911
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Limma and XML
Cancer Cancer
updated 12.9 years ago by 53k • written 13.0 years ago by ▴ 20
0
votes
2
replies
1.3k
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Extract Exon Features from GenomicFeatures Leads to Inconsistent Pairing of Gene and Exon IDs
GenomicFeatures GenomicFeatures
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 320
0
votes
3
replies
1.2k
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Using summarizeOverlaps with multiple samples/readgroups in a single bam file?
updated 13.0 years ago by 25k • written 13.0 years ago by ★ 7.9k
0
votes
3
replies
2.9k
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Filtering out duplicate probes in Affy data
Annotation mouse4302 annotate affy Annotation mouse4302 annotate affy
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 180
0
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0
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limma design and contrast matrix for paired experiment
Microarray Microarray
13.0 years ago David Westergaard ▴ 280
0
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0
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Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 14-15 Feb, Seattle
Cancer Cancer
13.0 years ago Martin Morgan 25k
46,699 results • Page 557 of 934
Recent ...
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C: DESeq2 Following RSEM
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Answer: Large logFC but somewhat high FDR
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