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3
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2.6k
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Welcome to the "Bioconductor" mailing list
SNP biomaRt SNP biomaRt
updated 14.2 years ago by ▴ 70 • written 14.2 years ago by ▴ 100
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2
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1.2k
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bam or sam for counting
updated 14.2 years ago by 21k • written 14.2 years ago by ★ 2.0k
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1
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1.7k
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an error to open bam file
updated 14.2 years ago by 25k • written 14.2 years ago by ★ 2.0k
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1
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1.2k
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Agi4x44Preprocess/Limma and number of significant p-values
Microarray Annotation limma Agi4x44PreProcess Microarray Annotation limma Agi4x44PreProcess
updated 14.2 years ago by ▴ 30 • written 14.2 years ago by ▴ 200
0
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0
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1.4k
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goSeq error (steve Shen)
GO Category edgeR goseq GO Category edgeR goseq
14.2 years ago Alicia Oshlack ▴ 100
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1
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1.3k
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rtracklayer fails to load in the new Bioconductor devel branch
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 310
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10
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2.5k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 14.2 years ago by 6.7k • written 14.2 years ago by ★ 2.0k
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1
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1.6k
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Error installing geneplotter
geneplotter geneplotter
updated 14.2 years ago by ★ 8.2k • written 14.2 years ago by ★ 13k
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0
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13k
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Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Cancer convert Cancer convert
14.2 years ago Chao-Jen Wong ▴ 580
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1
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1.4k
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how to use writeFASTA
ShortRead ShortRead
updated 14.2 years ago by 25k • written 14.2 years ago by ★ 2.0k
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7
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1.9k
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where to get chr_rpts file for dbSNP human 36.3 assembly
updated 14.2 years ago by 16k • written 14.2 years ago by ★ 1.0k
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2
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1.1k
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problem with IGH genes in org.Hs.egCHRLOC
biomaRt biomaRt
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 80
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0
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1.5k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.2 years ago Dan Tenenbaum ★ 8.2k
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0
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861
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How to use limma to do 2 factors with multiple level analysis
limma limma
14.2 years ago Zhi Zhang ▴ 70
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2
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1.3k
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annotate histograms
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ▴ 360
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1
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1.3k
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Agi4x44Preprocess/Limma and number of significant p-values
Microarray Annotation limma Agi4x44PreProcess Microarray Annotation limma Agi4x44PreProcess
updated 14.2 years ago by ▴ 110 • written 14.2 years ago by ▴ 200
0
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0
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1.1k
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Overlap of 3 gene lists and the Mantel-Haenszel test
14.2 years ago Edwin Groot ▴ 230
0
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1
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861
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annotation db for miRNA_2 Array
miRNA Annotation miRNA Annotation
14.2 years ago Marc Carlson ★ 7.2k
0
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0
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856
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Why are there different number of pathways in pathway2gene and in pathway2name (KEGG.db)?
Pathways Pathways
14.2 years ago Marc Carlson ★ 7.2k
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2
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2.7k
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unable to install lumi package
lumi BiocInstaller lumi BiocInstaller
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 360
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1
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1.2k
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limma printer layout
Microarray limma Microarray limma
updated 14.2 years ago by 53k • written 14.2 years ago by ▴ 740
0
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2
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1.5k
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goSeq error
GO edgeR goseq GO edgeR goseq
updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 70
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0
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757
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find unregulated genes from ranks
14.2 years ago Wendy Qiao ▴ 360
0
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2
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1.2k
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visualise model fit in edgeR
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updated 14.2 years ago by 53k • written 14.2 years ago by ▴ 930
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4
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1.8k
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Error loading library
updated 14.2 years ago by ★ 8.2k • written 14.2 years ago by ★ 13k
0
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0
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1.9k
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Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
14.2 years ago Kurinji Pandiyan ▴ 30
0
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0
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1.1k
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Help with comparisons of lists of fold changes
14.2 years ago David ▴ 860
0
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0
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1.1k
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Faculty position at Penn State (Bioinformatics and/or Statistics)
14.2 years ago Naomi Altman ★ 6.0k
0
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6
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2.4k
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Reading paired-end data into GRangesList
Alignment Alignment
updated 14.2 years ago by ▴ 970 • written 14.2 years ago by ▴ 100
0
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4
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1.1k
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Identifying the genome sequence of an affy probe
probe affy probe affy
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 20
0
votes
3
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1.6k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 14.2 years ago by ★ 4.2k • written 14.2 years ago by ★ 2.0k
0
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0
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1.3k
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Error with read.SMD() of marray
marray marray
14.2 years ago Guest User ★ 13k
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1
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1.2k
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PostForm and readHTML Table
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 760
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0
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1.7k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
14.2 years ago Richard Friedman ★ 2.0k
0
votes
2
replies
1.4k
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"internal equal" overlap mode for GRangesList
Infrastructure Infrastructure
updated 14.2 years ago by ★ 1.6k • written 14.2 years ago by ★ 11k
0
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1
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1.3k
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biomaRt query ??
biomaRt biomaRt
updated 14.2 years ago by ▴ 660 • written 14.2 years ago by ★ 1.1k
0
votes
10
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1.9k
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any package to do gene expression value estimation
updated 14.2 years ago by ★ 3.6k • written 14.2 years ago by ★ 2.0k
0
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11
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2.2k
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breastCancerNKI patients question
Annotation Annotation
14.2 years ago Xavier Robin ▴ 30
0
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0
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1.1k
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RNA-Seq: lognormal, Neg Bin, Poisson distribution
14.2 years ago Lana Schaffer ★ 1.3k
0
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0
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1.3k
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Computational biologist positions at the PICR
Proteomics Cancer Proteomics Cancer
14.2 years ago Crispin Miller ★ 1.1k
0
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0
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1.3k
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Single channel microarray
codelink codelink
14.2 years ago Niraj Nepal ▴ 20
0
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0
replies
796
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Fwd: F values from topTable with coef=NULL testing all zero or all equal?
14.2 years ago Michael Muratet ▴ 420
0
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2
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1.1k
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F values from topTable with coef=NULL testing all zero or all equal?
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 420
0
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3
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1.1k
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comparing two tables
GO GO
updated 14.2 years ago by 25k • written 14.2 years ago by ★ 1.5k
0
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0
replies
1.1k
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Normalization in Coverage
Coverage Normalization Coverage Normalization
14.2 years ago rohan bareja ▴ 200
0
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0
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1.5k
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topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO Visualization graph Rgraphviz topGO GO Visualization graph Rgraphviz topGO
14.2 years ago Joseph Skaf ▴ 20
0
votes
0
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2.6k
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Comparing two gff/gtf files : de novo transcripts v/s reference
14.2 years ago Abhishek Pratap ▴ 190
0
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3
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1.3k
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Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
probe probe
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 190
0
votes
0
replies
547
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control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
14.2 years ago Jeroen BOGIE ▴ 10
0
votes
4
replies
2.9k
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Connecting to Uniprot Biomart using biomaRt
biomaRt biomaRt
updated 14.2 years ago by ★ 8.2k • written 14.2 years ago by ▴ 30
46,712 results • Page 613 of 935
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
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The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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