0
votes
5
replies
1.4k
views
code improvements
updated 15.6 years ago by 6.7k • written 15.6 years ago by ▴ 60
0
votes
3
replies
1.8k
views
help with annaffy package
GO annaffy GO annaffy
15.6 years ago Taylor, Katie ▴ 90
0
votes
1
reply
775
views
help with affy annotation
annotate affy annotate affy
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 87, Issue 17
Clustering pcaMethods Clustering pcaMethods
15.6 years ago avinash gupta ▴ 130
0
votes
0
replies
1.2k
views
LIMMA
limma oligo limma oligo
15.6 years ago Tan, Yifang ▴ 50
0
votes
0
replies
1.1k
views
limma help - choosing an approach
limma oligo limma oligo
15.6 years ago Tan, Yifang ▴ 50
0
votes
1
reply
1.9k
views
LIMMA: Suitable measure of error from result object. stdev.unscaled?
Microarray Cancer limma Microarray Cancer limma
updated 15.6 years ago by 53k • written 15.6 years ago by ★ 1.9k
0
votes
0
replies
1.1k
views
GenomeGraphs issue
affy biomaRt GenomeGraphs affy biomaRt GenomeGraphs
15.6 years ago Zoppoli, Gabriele NIH/NCI [G] ▴ 20
0
votes
4
replies
2.1k
views
LIMMA: data with technical replicate/familial relationship/biological replicate
limma limma
updated 15.6 years ago by ★ 6.0k • written 15.7 years ago by ▴ 50
0
votes
2
replies
1.2k
views
annotating reads acording with position on mapping
Annotation annotate biomaRt IRanges Annotation annotate biomaRt IRanges
updated 15.6 years ago by ▴ 450 • written 15.6 years ago by ▴ 810
0
votes
1
reply
1.1k
views
GOstats/Category hyperGTest gene universe problem
Annotation Pathways GO Annotation Pathways GO
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 610
0
votes
0
replies
1.0k
views
Call for papers: BCBGC-10, USA, July 2010
15.6 years ago John Edward ▴ 80
0
votes
1
reply
2.6k
views
Follow-up -> ERROR: caught BioMart::Exception:
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 870
0
votes
8
replies
2.2k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation Cancer ChIPpeakAnno Annotation Cancer ChIPpeakAnno
updated 15.6 years ago by ★ 1.6k • written 15.6 years ago by ★ 4.3k
0
votes
1
reply
6.8k
views
Query ERROR: caught BioMart::Exception
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 870
0
votes
3
replies
1.5k
views
ChIPpeakAnno Critical Bug
AnnotationData AnnotationData
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ★ 1.6k
0
votes
1
reply
825
views
edgeWeights of a distGraph object
updated 15.6 years ago by 6.7k • written 15.6 years ago by ▴ 140
0
votes
0
replies
855
views
copy number variation
15.6 years ago Kay Jaja ▴ 90
0
votes
1
reply
1.4k
views
AFFX probes as result of differential expression analysis
hgu95a affy hgu95a affy
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 10
0
votes
0
replies
880
views
LIMMA: data with technical replicate/familial relationship/biological replicate
Cancer limma Cancer limma
15.6 years ago Steve Lianoglou ★ 13k
0
votes
3
replies
2.6k
views
reading a .psl file
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 250
0
votes
2
replies
1.4k
views
Copy number variation
updated 15.6 years ago by ★ 1.1k • written 15.6 years ago by ▴ 90
0
votes
1
reply
986
views
PR, topGene and 'gene.names should have the same length as the gene vector'
updated 15.6 years ago by 25k • written 15.6 years ago by ▴ 170
0
votes
0
replies
616
views
Perform merge analysis
GO GO
15.6 years ago sneha patil ▴ 220
0
votes
5
replies
1.4k
views
Error in loading "IRanges" package (version 1.6.1)
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 20
0
votes
0
replies
1.1k
views
ArrayExpress User Survey
ArrayExpress ArrayExpress
15.6 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.7k
views
Bug (?) in IRanges::findOverlaps(self, ignoreSelf=TRUE, ignoreRedundat=TRUE)
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
15.6 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
697
views
Thanks for solving problem related entrez id
15.6 years ago varpal singh ▴ 120
0
votes
0
replies
919
views
Control based normalization
Normalization probe Normalization probe
15.6 years ago Chris Fenton ▴ 80
0
votes
5
replies
1.4k
views
Query regarding entrez id
15.7 years ago • updated 15.6 years ago Sean Davis 21k
0
votes
3
replies
1.2k
views
tree manipulation
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 110
0
votes
2
replies
1.2k
views
Non-specific filtering for HyperGeometric/GSEA test
probe probe
15.7 years ago • updated 15.6 years ago Yuan Hao ▴ 30
0
votes
6
replies
1.3k
views
help: limma and changing gene results!
limma limma
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 50
0
votes
0
replies
1.1k
views
GDS normalization
Microarray Normalization Microarray Normalization
15.6 years ago Sean Davis 21k
0
votes
1
reply
1.2k
views
Unique CDF File
cdf affylmGUI cdf affylmGUI
updated 15.6 years ago by ★ 6.5k • written 15.7 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Bioconductor Developer Meeting - Heidelberg 17./18. Nov 2010
Sequencing Annotation Sequencing Annotation
15.7 years ago Wolfgang Huber ★ 13k
0
votes
8
replies
2.0k
views
GEO annotations
updated 15.7 years ago by 21k • written 15.6 years ago by ★ 1.5k
0
votes
1
reply
1.5k
views
Agi4x44PreProcess Problem
Agi4x44PreProcess Agi4x44PreProcess
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Agilent arrays missing spots
updated 15.7 years ago by ★ 11k • written 15.6 years ago by ▴ 250
0
votes
3
replies
1.8k
views
lattice and base-graphics using gridBase
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 60
0
votes
13
replies
1.9k
views
rtracklayer GraphTrackLine
convert convert
updated 15.7 years ago by ★ 11k • written 15.7 years ago by ★ 1.6k
0
votes
1
reply
1.5k
views
loop over IRanges spaces
Coverage convert rtracklayer ASSIGN Coverage convert rtracklayer ASSIGN
updated 15.7 years ago by ★ 11k • written 15.7 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Unable to get the Platform Table using fData on eset object
ArrayExpress ArrayExpress
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 30
0
votes
3
replies
959
views
Error compiling affyio - undefined symbol: egzread
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 30
0
votes
4
replies
2.1k
views
org.Hs.eg.db
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 60
0
votes
1
reply
1.4k
views
GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 460
0
votes
3
replies
1.8k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
15.7 years ago Noah Dowell ▴ 410
0
votes
0
replies
1.0k
views
pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
15.7 years ago Leo Lahti ▴ 10
0
votes
0
replies
1.2k
views
Problems in MAplot for affybatch objects
affy affyPLM affy affyPLM
15.7 years ago Ben Bolstad ★ 1.2k
0
votes
2
replies
1.0k
views
Obtaining Normalised Signal intensities
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 20
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
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