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0
votes
0
replies
1.2k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
Annotation
GO
Cancer
GOstats
biomaRt
Annotation
GO
Cancer
GOstats
biomaRt
17.3 years ago
Emmanuel Levy
▴ 270
0
votes
1
reply
1.1k
views
Graph for microarray data
updated 17.3 years ago by
Stephen Henderson
★ 1.0k • written 17.3 years ago by
Tim Smith
★ 1.1k
0
votes
1
reply
1.2k
views
Microarray pattern standardization and fold change cut-offs
Clustering
Clustering
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Johan van Heerden
▴ 40
0
votes
2
replies
1.9k
views
multtest different seed
multtest
multtest
17.3 years ago
Stefano Moretti
▴ 20
0
votes
2
replies
1.6k
views
p.adj and logFC
limma
limma
updated 17.3 years ago by
James W. MacDonald
68k • written 17.3 years ago by
Yisong Zhen
▴ 200
0
votes
2
replies
1.2k
views
Limma double paired analysis
limma
limma
updated 17.3 years ago by
James W. MacDonald
68k • written 17.3 years ago by
john seers IFR
▴ 810
0
votes
1
reply
1.7k
views
GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
gregory voisin
▴ 430
0
votes
0
replies
701
views
display many forest plots together
17.3 years ago
carol white
▴ 680
1
vote
2
replies
1.6k
views
Query about GO term enrichment
Microarray
GO
Microarray
GO
updated 17.3 years ago by
rgentleman
★ 5.5k • written 17.3 years ago by
Sameet Mehta
▴ 30
0
votes
1
reply
1.2k
views
How to create marrayLayout for Agilent Mouse Development 44K microarray
Microarray
Microarray
updated 17.4 years ago by
Jean Yee Hwa Yang
▴ 130 • written 17.4 years ago by
Nayeem Quayum
▴ 110
0
votes
4
replies
3.2k
views
Converting EnSeMBL Probe names into Gene Name
probe
probe
updated 17.4 years ago by
Sean Davis
21k • written 17.3 years ago by
Gundala Viswanath
▴ 230
0
votes
2
replies
1.5k
views
Question about using Biostrings & BSgenome
oligo
oligo
updated 17.4 years ago by
Joern Toedling
▴ 730 • written 17.4 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
0
replies
1.3k
views
Definition of the CellHTS2 normalizePlates parameter scale
Normalization
cellHTS2
Normalization
cellHTS2
17.4 years ago
c.lieftink@nki.nl
▴ 40
0
votes
1
reply
1.2k
views
Ensembl IDs 2 GO term enrichment --> simple solution withoutbiomart? ( I can't install it because of RCurl)
GO
GOstats
biomaRt
GO
GOstats
biomaRt
17.4 years ago
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.4k
views
Definition of the CellHTS2 normalizePlates parameter scale
Normalization
cellHTS2
Normalization
cellHTS2
updated 17.4 years ago by
Elin Axelsson
▴ 60 • written 17.4 years ago by
c.lieftink@nki.nl
▴ 40
0
votes
2
replies
1.5k
views
biomart doesn't annotate all the genes queried -CEACAM6
Cancer
hgu133plus2
annotate
affy
biomaRt
Cancer
hgu133plus2
annotate
affy
biomaRt
17.4 years ago
Julian Lee
▴ 140
0
votes
0
replies
1.1k
views
Sc03b_MR_v04 CDF package
Annotation
probe
affy
Annotation
probe
affy
17.4 years ago
Williams, Alan
▴ 40
0
votes
8
replies
2.7k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO
GOstats
biomaRt
GO
GOstats
biomaRt
updated 17.4 years ago by
rgentleman
★ 5.5k • written 17.4 years ago by
Emmanuel Levy
▴ 270
1
vote
0
replies
1.2k
views
SIM new package for Statistical Integration of Microarrays
SNP
Microarray
Visualization
Cancer
SNP
Microarray
Visualization
Cancer
17.4 years ago
Maarten van Iterson
▴ 60
0
votes
5
replies
1.6k
views
dChip LOH and copy number analysis
updated 17.4 years ago by
Henrik Bengtsson
★ 2.4k • written 17.4 years ago by
Yu Chuan Tai
▴ 440
0
votes
0
replies
855
views
Retrieve SNP annotation
SNP
annotate
SNP
annotate
17.4 years ago
Fabio Sanchez
▴ 10
0
votes
3
replies
1.4k
views
GEOQuery - from a LOCAL SOFT file to an ExprSet object
convert
GEOquery
convert
GEOquery
updated 17.4 years ago by
Sean Davis
21k • written 17.4 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.1k
views
zebrafish annotation
Annotation
zebrafish
Annotation
zebrafish
updated 17.4 years ago by
Marc Carlson
★ 7.2k • written 17.4 years ago by
Bio Sam
▴ 60
0
votes
1
reply
1.2k
views
kinexus antibody arrays
Cancer
Cancer
17.4 years ago
Richard Friedman
★ 2.0k
0
votes
1
reply
2.4k
views
what is the best baseline transformation method before clustering
GO
Clustering
probe
affy
gcrma
GeneSpring
GO
Clustering
probe
affy
gcrma
GeneSpring
updated 17.4 years ago by
Sean Davis
21k • written 17.4 years ago by
Ruppert Valentino
▴ 270
0
votes
0
replies
1.2k
views
qPCR workshops in autumn 2008
qPCR
qPCR
17.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
983
views
Pd info package affy 10K array
Microarray
Annotation
Cancer
cdf
probe
affy
Microarray
Annotation
Cancer
cdf
probe
affy
17.4 years ago
Henrik Bengtsson
★ 2.4k
0
votes
0
replies
789
views
Category for Illumina transcripts
Category
Category
17.4 years ago
Lana Schaffer
★ 1.3k
0
votes
1
reply
1.8k
views
arrayQualityMetrics - how do I use this with an MAList object???
Cancer
convert
arrayQualityMetrics
Cancer
convert
arrayQualityMetrics
updated 17.4 years ago by
Marcus Davy
▴ 680 • written 17.4 years ago by
Martin Morgan
25k
0
votes
0
replies
912
views
mu11ksuba + gcrma = error
mu11ksuba
cdf
gcrma
mu11ksuba
cdf
gcrma
17.4 years ago
Ido M. Tamir
▴ 150
0
votes
2
replies
1.3k
views
contrast matrix in LIMMA
Microarray
limma
Microarray
limma
17.4 years ago
Erika Melissari
▴ 250
0
votes
3
replies
1.9k
views
topGO question
Annotation
GO
topGO
Annotation
GO
topGO
updated 17.4 years ago by
Adrian Alexa
▴ 400 • written 17.4 years ago by
Heike Pospisil
▴ 310
0
votes
0
replies
743
views
unauthorized payment
17.4 years ago
BankWest
▴ 10
0
votes
0
replies
1.3k
views
arrayQualityMetrics - how do I use this with an MAList object???
convert
arrayQualityMetrics
convert
arrayQualityMetrics
17.4 years ago
Park-Ng, Zaneta
▴ 40
0
votes
0
replies
1.7k
views
Correct p-value in GSA (Gene set enrichment) permutation tests? [Scanned.]
17.4 years ago
Dirk Repsilber
▴ 10
0
votes
0
replies
974
views
infinium methylation arrays
17.4 years ago
Katrina bell
▴ 30
0
votes
1
reply
1.0k
views
RGraphviz 1.81 / R 2.7.2 crashes on simple call to toDot
updated 17.4 years ago by
michael watson IAH-C
★ 3.4k • written 17.4 years ago by
Altmann, Michael
▴ 30
0
votes
1
reply
906
views
mas5calls p-values
updated 17.4 years ago by
James W. MacDonald
68k • written 17.4 years ago by
Salih Tuna
▴ 10
0
votes
2
replies
939
views
How to fit labels using bitmap
updated 17.4 years ago by
Henrik Bengtsson
★ 2.4k • written 17.4 years ago by
balag Ganesan
▴ 140
0
votes
0
replies
1.2k
views
F tests of covariates in maanova
maanova
maanova
17.4 years ago
Kristen K Dang
▴ 50
0
votes
1
reply
842
views
Is from and to reversed in the toDotR function in the graph package?
graph
graph
updated 17.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.4 years ago by
Altmann, Michael
▴ 30
0
votes
0
replies
1.8k
views
topGO and font size in the graph plots
graph
Rgraphviz
topGO
graph
Rgraphviz
topGO
17.4 years ago
michael watson IAH-C
★ 3.4k
0
votes
3
replies
1.5k
views
Generating random gene lists: does sample/resample generate random sets
Classification
Classification
17.4 years ago
Scott Ochsner
▴ 300
0
votes
0
replies
781
views
toDotR ignores edgeData
graph
graph
17.4 years ago
Altmann, Michael
▴ 30
0
votes
4
replies
3.3k
views
How to get and save normalized data from limma
Clustering
limma
Clustering
limma
17.4 years ago
Wang, Jixin
▴ 130
0
votes
2
replies
2.2k
views
Generating random gene lists: does sample/resample generate random sets
Classification
Classification
updated 17.4 years ago by
Thomas Hampton
▴ 750 • written 17.4 years ago by
Scott Ochsner
▴ 300
0
votes
3
replies
1.5k
views
Problem following monograph directions in Chapter 4
17.4 years ago
McGee, Monnie
▴ 300
0
votes
1
reply
795
views
Rgraphviz issues
updated 17.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.4 years ago by
michael watson IAH-C
★ 3.4k
0
votes
2
replies
1.6k
views
images of affyPLM package in R 2.7.2
updated 17.4 years ago by
Ben Bolstad
★ 1.2k • written 17.4 years ago by
Hui-Yi Chu
▴ 160
0
votes
0
replies
770
views
[ANNOUNCE] Shouton.com v1.3b Released
GO
GO
17.4 years ago
Josh Rhodes
▴ 10
46,726 results • Page
739 of 935
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
ATpoint
★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening in a clean install
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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