0
votes
1
reply
1.2k
views
Downloading Data from SMD
Cancer Breast Cancer Breast
updated 21.6 years ago by ▴ 80 • written 21.6 years ago by ▴ 30
0
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1
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1.7k
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normalization and outlier detection
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updated 21.6 years ago by 68k • written 21.6 years ago by ▴ 110
0
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0
replies
982
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gcrma in affylmGUI
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21.6 years ago James Wettenhall ▴ 1000
0
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1
reply
743
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marrayNorm to exprSet
convert convert
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ★ 3.4k
0
votes
0
replies
895
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Varying intensity histograms for GCRMA
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21.6 years ago Andrew Harrison ▴ 60
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1
reply
765
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How would I normally compare swirl?
GO limma GO limma
updated 21.6 years ago by 68k • written 21.6 years ago by ★ 3.4k
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1
reply
954
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Rgraphviz and MacOS
Rgraphviz Rgraphviz
21.6 years ago Sean Davis 21k
0
votes
4
replies
1.3k
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logit-t source code
updated 21.6 years ago by ▴ 80 • written 21.6 years ago by ▴ 20
0
votes
1
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1.1k
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gcrma and other normalizations
Normalization gcrma Normalization gcrma
updated 21.6 years ago by ▴ 90 • written 21.6 years ago by ▴ 500
0
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1
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1.6k
views
Normalizing single-channel data [was: is my normalization right?]
Genetics Normalization GO vsn limma Genetics Normalization GO vsn limma
updated 21.6 years ago by ▴ 90 • written 21.6 years ago by 53k
0
votes
0
replies
636
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Different order from MA$targets
21.6 years ago marchiem@libero.it ▴ 150
0
votes
4
replies
1.6k
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Theoretical Question
Microarray GO Clustering Cancer limma Microarray GO Clustering Cancer limma
updated 21.6 years ago by ▴ 810 • written 21.6 years ago by 68k
0
votes
1
reply
1.2k
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Swirl Data Results
updated 21.6 years ago by ▴ 10 • written 21.6 years ago by ▴ 20
0
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1
reply
952
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Missing Functional Annotation in mgu74av2
Annotation Cancer Annotation Cancer
updated 21.6 years ago by ★ 2.9k • written 21.6 years ago by ★ 2.0k
0
votes
0
replies
771
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Problem with obtaining annotation of mgu74av2 chip
GO Cancer annotate GO Cancer annotate
21.6 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
1.2k
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simple qc "subscript out of bounds error"
probe probe
21.6 years ago Fabrice Girardot ▴ 10
0
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1
reply
949
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AnnBuilder error ....
updated 21.6 years ago by ★ 2.9k • written 21.6 years ago by ▴ 300
0
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0
replies
718
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How to use experimental data packages?
21.6 years ago Tae-Hoon Chung ▴ 180
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1
reply
1.1k
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Theoretical Question
GO Clustering GO Clustering
updated 21.6 years ago by ★ 6.0k • written 21.7 years ago by ▴ 90
0
votes
3
replies
1.5k
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about the swirl data
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 90
0
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0
replies
967
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Problem with obtaining annotation of mgu74av2 chip
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21.6 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
910
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Normalization with common reference
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21.6 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
671
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file format problem
21.6 years ago Jose Gadea Vacas ▴ 10
0
votes
0
replies
624
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test
21.6 years ago xpzhang ▴ 90
0
votes
4
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1.4k
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Recent changes to Bioconductor packages
GO annaffy GO annaffy
21.7 years ago • updated 21.6 years ago madman@jimmy.harvard.edu ▴ 850
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2
replies
1.0k
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Fitting a contrast matrix in Limma
limma limma
updated 21.6 years ago by 53k • written 21.6 years ago by ▴ 30
0
votes
4
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1.6k
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maBoxplot in v1.4
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 30
0
votes
2
replies
1.1k
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normalization
Transcription Microarray Transcription Microarray
updated 21.6 years ago by ▴ 920 • written 21.6 years ago by ▴ 90
0
votes
2
replies
1.1k
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gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 90
0
votes
0
replies
706
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Re: Welcome to the "Bioconductor" mailing list
21.6 years ago mkmarket@runbox.com ▴ 10
0
votes
0
replies
1.2k
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limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
21.6 years ago James Wettenhall ▴ 1000
0
votes
1
reply
554
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orphaned links
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 10
0
votes
1
reply
811
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Normalization with common reference
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updated 21.6 years ago by ★ 13k • written 21.6 years ago by ▴ 150
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votes
2
replies
2.5k
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supervised clustering
updated 21.6 years ago by ▴ 220 • written 21.6 years ago by ▴ 30
0
votes
2
replies
1.3k
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Running justRMA on .CEL files in another directory
plier plier
updated 21.6 years ago by ▴ 70 • written 21.6 years ago by ▴ 50
0
votes
1
reply
831
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Time course in BioC
genefilter genefilter
updated 21.6 years ago by ▴ 90 • written 21.6 years ago by ▴ 150
0
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0
replies
912
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Arabidosis annotation package
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21.6 years ago Jerzy Dyczkowski ▴ 10
0
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1
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2.9k
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Resize plots to display axis labels
GO GO
updated 21.6 years ago by ▴ 550 • written 21.6 years ago by ▴ 500
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votes
1
reply
1000
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Biobase or affy package makes update() not work
affy affy
updated 21.6 years ago by ▴ 950 • written 21.6 years ago by ★ 1.4k
0
votes
1
reply
1.2k
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Rgraphviz installation problems
Rgraphviz Rgraphviz
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 20
0
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0
replies
675
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MetaData broken links
21.6 years ago James F. Reid ▴ 10
0
votes
2
replies
1.6k
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Hierarchical clustering and shrinking centroids...
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updated 21.6 years ago by ★ 1.0k • written 21.6 years ago by ▴ 180
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3
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Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 21.6 years ago by ★ 1.1k • written 21.7 years ago by ▴ 50
0
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0
replies
819
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library versions problem
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21.6 years ago Rob Dunne ▴ 230
0
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0
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Problem with PAM using R 1.9.0
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21.6 years ago Michelle Kittleson ▴ 10
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2
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Un-balanced dye-swaps and LIMMA
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21.6 years ago Matthew Hannah ▴ 940
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1
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1.1k
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How to filter up- and down-regulated genes?
updated 21.6 years ago by ★ 6.0k • written 21.7 years ago by ▴ 60
0
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1.3k
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updated 21.6 years ago by 21k • written 21.6 years ago by ▴ 500
0
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1
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837
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Different results with limma on R 1.8.1 and R 1.9.0
limma limma
updated 21.6 years ago by 53k • written 21.7 years ago by ▴ 160
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1
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917
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single channel in limma...
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updated 21.6 years ago by 53k • written 21.7 years ago by ▴ 300
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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