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Comment: C: how to get the estimated libSize in DiffBind
3.9 years ago Guandong Shang ▴ 40
0
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1
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871
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Comment: C: A problem about RNA-seq workflow:9 Time course experiments
3.9 years ago Guandong Shang ▴ 40
3
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3
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871
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A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 3.9 years ago by 41k • written 3.9 years ago by ▴ 40
0
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0
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682
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Comment: C: Some confuse in ?results example of DESeq2
3.9 years ago Guandong Shang ▴ 40
0
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1
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682
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Comment: C: Some confuse in ?results example of DESeq2
3.9 years ago Guandong Shang ▴ 40
0
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4
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682
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Some confuse in ?results example of DESeq2
deseq2
updated 3.9 years ago by 41k • written 3.9 years ago by ▴ 40
0
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0
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960
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A warning : stop codons that cannot be mapped to an exon in using makeTxDbFromGFF
genomicranges genomicfeatures
4.0 years ago Guandong Shang ▴ 40
0
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1
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1.1k
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Comment: C: diffBind: differentially bound sites are highly different between using EDGER an
4.0 years ago Guandong Shang ▴ 40
0
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0
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1.4k
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Comment: C: how to deal with the replicate count when do k-means or someother machine-learni
4.0 years ago Guandong Shang ▴ 40
0
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1
reply
1.4k
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Comment: C: how to deal with the replicate count when do k-means or someother machine-learni
4.0 years ago Guandong Shang ▴ 40
2
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4
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1.4k
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how to deal with the replicate count when do k-means or someother machine-learning
deseq2
updated 4.0 years ago by 41k • written 4.0 years ago by ▴ 40
0
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0
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1.1k
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Comment: C: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
4.1 years ago Guandong Shang ▴ 40
3
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4
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1.1k
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how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
GenomicFeatures genomicranges
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 40
0
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0
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1.1k
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Answer: A: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
4.1 years ago Guandong Shang ▴ 40
0
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0
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1.1k
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Comment: C: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
4.1 years ago Guandong Shang ▴ 40
0
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0
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867
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Comment: C: Some confuse about the DBA_SCORE_TMM_READS_EFFECTIVE_CPM in DiffBind
4.1 years ago Guandong Shang ▴ 40
0
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0
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841
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Comment: C: The coordinate system problem about DiffBind output
4.1 years ago Guandong Shang ▴ 40
1
vote
2
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841
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The coordinate system problem about DiffBind output
diffbind Rory Stark coordinate
updated 4.1 years ago by ★ 5.2k • written 4.2 years ago by ▴ 40
3
votes
2
replies
867
views
Some confuse about the DBA_SCORE_TMM_READS_EFFECTIVE_CPM in DiffBind
diffbind CPM TMM
updated 4.1 years ago by ★ 5.2k • written 4.1 years ago by ▴ 40
0
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1
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1.0k
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ChIPSeeker - options(ChIPseeker.downstreamDistance = 500) seems not work
ChIPseeker
4.2 years ago Guandong Shang ▴ 40
0
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0
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1.0k
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Comment: C: ChIPSeeker - options(ChIPseeker.downstreamDistance = 500) seems not work
4.2 years ago Guandong Shang ▴ 40
0
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0
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869
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Comment: C: I am wondering whether Gviz can support a plot like ggridges
4.5 years ago Guandong Shang ▴ 40
0
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2
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869
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I am wondering whether Gviz can support a plot like ggridges
Gviz
4.5 years ago Guandong Shang ▴ 40
0
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0
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1.1k
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Comment: C: A Problem about seqnames() in GenomicRanges
4.6 years ago Guandong Shang ▴ 40
0
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1
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1.1k
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Comment: C: A Problem about seqnames() in GenomicRanges
4.6 years ago Guandong Shang ▴ 40
0
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0
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1.1k
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Comment: C: A Problem about seqnames() in GenomicRanges
4.6 years ago Guandong Shang ▴ 40
0
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5
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1.1k
views
A Problem about seqnames() in GenomicRanges
GenomicRanges
4.6 years ago Guandong Shang ▴ 40
0
votes
1
reply
783
views
I am wondering whether Gviz can plot thin box(noncoding part) directly from GRange
Gviz
updated 4.7 years ago by ▴ 730 • written 4.7 years ago by ▴ 40
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