Prophet

Created A Post With More Than 20 Followers

Awarded 139 times (see all awards). Earned by the following contributors:
m.metsger • 0
4 years, 11 months ago
tximport abundanceCol parameter not functioning for rsem data
dagurim • 0
4 years, 11 months ago
DESeq2: Model matrix problem with 30 samples
inzirio ▴ 10
4 years, 11 months ago
Italy
SingleR Error in getMethod(generic, "ANY")
ecg1g15 ▴ 30
4 years, 11 months ago
How to extract top DEG and their sample values
adR ▴ 40
4 years, 11 months ago
Germany, München
correlation analysis
pkachroo ▴ 10
4 years, 11 months ago
Do I have clustering by library size?
pgugger ▴ 70
4 years, 11 months ago
United States
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
Nala • 0
4 years, 11 months ago
Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
Endre Sebestyén ▴ 70
4 years, 12 months ago
Hungary, Budapest
GSVA on gene sets with 2 genes
Sam ▴ 10
4 years, 12 months ago
Jerusalem
What is the correct use of removeBatchEffect's design parameter
anna.cot.anna.cot ▴ 40
4 years, 12 months ago
United States
Paired analysis adjusted for RIN value
anna.cot.anna.cot ▴ 40
4 years, 12 months ago
United States
log transform or not the dependent variable/ covariates
C T ▴ 140
4 years, 12 months ago
United States
emptyDrops identified less non-empty cells with lower total UMI counts?
anders.tondell ▴ 30
4 years, 12 months ago
Norway
flowset/ncdfFlowset replace keywords doesn't work right
bas_work ▴ 30
5 years ago
Netherlands
Cannot properly finish biomaRt query
alessandro.testori • 0
5 years ago
diffbind error in sum(sapply(peaks, nrow)) : invalid 'type' (list) of argument
CodeAway ▴ 70
5 years ago
DiffBind for ATACseq without replicates
msm545 • 0
5 years ago
DESeq2 --- differences in log2FC between results from DESeq() command and nbinomLRT() command
ATpoint ★ 5.0k
5 years ago
Germany
edgeR for single-cell data with inferential replicates
Johannes Rainer ★ 2.1k
5 years ago
Italy
Mass Spectrometry Data Analysis with the Spectra Package
linouhao ▴ 20
5 years, 1 month ago
United States
limma voom and trend
linouhao ▴ 20
5 years, 1 month ago
United States
do cox and km plot
rebecca.lea.johnston • 0
5 years, 2 months ago
Australia
edgeR batch effect correction for unevenly distributed groups
f_rahmdani • 0
5 years, 2 months ago
Canada
DESeq2 with 2 biological replicates: if the replicates are not compatible for some genes
Lucy ▴ 60
5 years, 3 months ago
United Kingdom
EdgeR blocking factor - missing paired sample
linouhao ▴ 20
5 years, 4 months ago
United States
is there a function in edger the same as vst or rlog in deseq2
p.joshi ▴ 40
5 years, 5 months ago
Germany
Downsample or not to downsample?
eggrandio • 0
5 years, 5 months ago
United States
Clustering differentially expressed genes in response to multiple treatments (using edgeR)
Ali Sajid Imami • 0
5 years, 6 months ago
United States
Where to find the supplementary files for the case studies in edgeR User Guide
Raito92 ▴ 60
5 years, 6 months ago
Italy
Alternative tools to perform GO enrichment on DE genes
svlachavas ▴ 840
5 years, 8 months ago
Germany/Heidelberg/German Cancer Resear…
Difference in dimensionality reduction plots based on DESeq2 R package and core functions for RNA-Seq data
Michael Love 43k
6 years, 2 months ago
United States
New function lfcShrink() in DESeq2
Michael Love 43k
6 years, 11 months ago
United States
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Robert Ivanek ▴ 750
7 years, 4 months ago
Switzerland
How to obtain summary statistics for all Bioc releases
Coby Viner ▴ 50
8 years, 4 months ago
University of Toronto, Canada
ChIPQC installation does not force latest DiffBind version
Coby Viner ▴ 50
8 years, 4 months ago
University of Toronto, Canada
ChIPQC with GRCh38/hg38 requires manual loading of hg38 annotation
Coby Viner ▴ 50
9 years ago
University of Toronto, Canada
ChIPQCreport yields a cryptic error if "Replicate" data is not specified
Coby Viner ▴ 50
9 years, 1 month ago
University of Toronto, Canada
ChIPQC GRCh38 usage yields "Unsupported annotation:hg38"
Till ▴ 30
9 years, 6 months ago
Germany
Sushi example data not correct?
139 results • Page 3 of 3
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