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Pieter Coussement
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30
@pieter-coussement-5732
Last seen 10.2 years ago
Hi,
I'm using flowCore to process my flowcytometry data.
I'm able to process single FCS files using read.FCS. I have to put in
emptyValue=FALSE, for correct readin.
Now I would like to use read.flowSet, to read in all files at once.
This
seems impossible as the command keeps on asking to put in
emptyValue=FALSE, whilst i have done this, see the code below.
> flowDataSet <- read.flowSet(path="./Data/", transformation=FALSE,
emptyValue=FALSE)
Error in fcs_text_parse(txt, emptyValue = emptyValue) : No end found
There could be double delimiter existing in keyword value.
Please set argument 'emptyValue' as FALSE and try again!
How do I solve this?
Or is there a way to read in the individual files using a loop, and
adding them to a flowSet? (more clutter, but then I would be able to
directly put in the emptyValue argument)
Best regards,
Pieter
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