I cannot install packages (ChIPseeker) in R/BiocManager This is the warning message: package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'ChIPseeker'. Here is the code and error I get:

> BiocManager::install("ChIPseeker")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31)
Warning message:
package(s) not installed when version(s) same as or greater than current; use `force =
  TRUE` to re-install: 'ChIPseeker'

Then I did as follows:

> BiocManager::install("ChIPseeker", force = TRUE)
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31)
Installing package(s) 'ChIPseeker'
trying URL 'https://bioconductor.org/packages/3.16/bioc/bin/macosx/contrib/4.2/ChIPseeker_1.34.1.tgz'
Content type 'application/x-gzip' length 7045980 bytes (6.7 MB)
==================================================
downloaded 6.7 MB


The downloaded binary packages are in
    /var/folders/nj/k2k9s_x133l5jsc5x9j5t0km0000gn/T//RtmpZCVBrc/downloaded_packages

When I try to load the library(ChIPseeker), I get following error:

> library(ChIPseeker)
Error: package or namespace load failed for ‘ChIPseeker’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called ‘GO.db’



# library(ChIPseeker) 
# Error: package or namespace load failed for ‘ChIPseeker’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called ‘GO.db’

Please avoid cross posting and see the response here: https://github.com/Bioconductor/BiocManager/issues/148

It seems like GO.db is missing even though it is a distant dependency of ChIPseeker.

Make sure you are not installing packages via other methods other than BiocManager, e.g., conda which may cause these type of issues.

Best regards,

Marcel