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DESeq2- Mysterious interaction suppresses DEGs
DESeq2 PCAplot RNA-Seq DesignModel
4 hours ago • updated 3 hours ago shaunpeterson • 0
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STRINGdb : error with string_db$plot_network()
STRINGdb
updated 5 hours ago by ▴ 80 • written 8 hours ago by • 0
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Numerical differences in DESeq2 output depending on different design matrix construction
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11 hours ago Ken C • 0
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Minor alleles giving NA from R biomart getBM?
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Error while installing BiocManager::install("org.Vdahliae.eg.db")
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2 days ago • updated 12 hours ago Patadù ▴ 10
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News: European Bioconductor Conference 2023 planning
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updated 12 hours ago by • 0 • written 19 months ago by ▴ 70
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Ensembl plants at annotationHub?
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updated 14 hours ago by ★ 2.0k • written 5.5 years ago by ★ 4.0k
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maSigPro genes from clusters
masigpro clustering
updated 5 hours ago by • 0 • written 7.9 years ago by • 0
8 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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