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grch38
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Chromosme Name: "CHR_HSCHR19..."
biomart
ensembl
grch38
6.1 years ago
rbenel
▴ 40
4
votes
2
replies
2.2k
views
TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
tcgabiolinks
grch38
annotation
updated 6.5 years ago by
Tiago C. Silva
▴ 270 • written 6.5 years ago by
salvocomplicazioni1
• 0
2
votes
1
reply
1.0k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
6.5 years ago
salvocomplicazioni1
• 0
0
votes
4
replies
2.2k
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Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 7.5 years ago by
Wei Shi
★ 3.6k • written 7.5 years ago by
jan.soderman
• 0
5
votes
2
replies
2.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.8 years ago by
Sonali Arora
▴ 390 • written 8.8 years ago by
Thomas Maurel
▴ 800
5 results • Page
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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
by
christianhilton64
• 0
I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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