Bioconductor Abarray

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Abarray error ABI Human Genome Survey V2

7.1 years ago judemtaylor • 0

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probe ABarray probe ABarray

13.1 years ago Iain Gallagher ▴ 930

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Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN

updated 13.7 years ago by Guillaume Meurice ▴ 210 • written 13.7 years ago by Dana.Stanley@csiro.au ▴ 110

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GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter

updated 13.7 years ago by Jenny Drnevich ★ 2.0k • written 13.7 years ago by Dana.Stanley@csiro.au ▴ 110

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GO TimeCourse genefilter timecourse ABarray preprocessCore GeneSelector GO TimeCourse

13.7 years ago Dennis.Burian@faa.gov ▴ 90

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ABarray ABarray

updated 14.9 years ago by Heidi Dvinge ★ 2.0k • written 14.9 years ago by Brian Diggs ▴ 30

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953

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ABarray ABarray

15.7 years ago Priyanka Jain ▴ 20

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ABarray ABarray

15.7 years ago Priyanka Jain ▴ 20

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Cancer ABarray Cancer ABarray

updated 15.7 years ago by SimonNoël ▴ 450 • written 15.7 years ago by Hervé Pagès 16k

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ABarray ABarray

updated 15.7 years ago by Thomas Hampton ▴ 750 • written 15.7 years ago by SimonNoël ▴ 450

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ABarray ABarray

17.4 years ago Sabah Khalid ▴ 10

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ABarray ABarray

updated 18.1 years ago by James W. MacDonald 68k • written 18.1 years ago by Alison Ziesel ▴ 60

12 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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