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Comment: Identical samples after deseq2 batch effect removal
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maripane
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Thanks Michael for quick reply.
Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
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> 2 of my treatment samples have identical normalised gene expression for all genes.
This sounds like a quantification / sample labeling…
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I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
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Denise
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This makes a lot of sense, thank you very much!
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Hi! I'm facing the same problem.
Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
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