Bioconductor Affy

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GEO affy

4 weeks ago • updated 23 days ago Kurtis • 0

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maplot_function rma_function ExpressionSet MicroarrayData affy

5 weeks ago Mj.A. • 0

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frmaTools affy

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by michelafrancesconi8 • 0

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Pathways probe affy Pathways probe affy

written 17.6 years ago by mike Ad. ▴ 30

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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Bioconductor Install affy

updated 5 months ago by ATpoint ★ 4.1k • written 17 months ago by laujihen • 0

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crlmm hapmapsnp6 genomewidesnp6Crlmm affy

updated 10 months ago by Kevin Blighe ★ 3.9k • written 10 months ago by Vincent J. Carey, Jr. 6.7k

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affy affy

updated 8 weeks ago by Gordon Smyth 50k • written 19.0 years ago by SAURIN ★ 1.1k

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multtest affy multtest affy

updated 8 months ago by Amruta • 0 • written 20.7 years ago by Bob ▴ 20

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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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