Bioconductor Alternative Splicing

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678

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

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872

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 180 • written 4.4 years ago by 116100016 • 0

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768

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rna seq SGSeq Alternative splicing

updated 4.5 years ago by Leonard Goldstein ▴ 180 • written 4.5 years ago by 116100016 • 0

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1.0k

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aspli readCounts rna-seq alternative splicing AS

5.2 years ago fernandalpcosta ▴ 10

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885

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R alternative splicing ASpli AsDiscover

5.3 years ago abdul rawoof ▴ 60

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931

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rnaseq alternative splicing ASpli

5.4 years ago nicolas.guyon2 • 0

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1.5k

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rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

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1.2k

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maser R rMATs alternative splicing

5.6 years ago Reza • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.5 years ago by Gordon Smyth 50k • written 6.5 years ago by lirongrossmann ▴ 80

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1.2k

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limma voom alternative splicing

8.1 years ago osa.zuta ▴ 40

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2.6k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 180 • written 8.2 years ago by vakul.mohanty ▴ 10

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1.1k

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deseq2 dexseq alternative splicing

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by sahiilseth • 0

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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1.8k

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dexseq alternative splicing exon skipping

updated 9.1 years ago by Simon Anders ★ 3.7k • written 9.1 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

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C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0