Bioconductor Alternative splicing

Showing : Alternative splicing • reset

votes

replies

680

views

psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

votes

replies

874

views

sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 180 • written 4.4 years ago by 116100016 • 0

votes

replies

771

views

rna seq SGSeq Alternative splicing

updated 4.5 years ago by Leonard Goldstein ▴ 180 • written 4.5 years ago by 116100016 • 0

votes

replies

1.0k

views

aspli readCounts rna-seq alternative splicing AS

5.2 years ago fernandalpcosta ▴ 10

votes

replies

887

views

R alternative splicing ASpli AsDiscover

5.3 years ago abdul rawoof ▴ 60

votes

replies

935

views

rnaseq alternative splicing ASpli

5.4 years ago nicolas.guyon2 • 0

votes

replies

1.5k

views

rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

votes

replies

1.2k

views

maser R rMATs alternative splicing

5.6 years ago Reza • 0

votes

replies

1.3k

views

limma rna-seq alternative splicing

updated 6.5 years ago by Gordon Smyth 50k • written 6.5 years ago by lirongrossmann ▴ 80

vote

replies

1.2k

views

limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

votes

replies

2.6k

views

sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 180 • written 8.2 years ago by vakul.mohanty ▴ 10

votes

1.1k

views

deseq2 dexseq alternative splicing

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by sahiilseth • 0

votes

replies

2.2k

views

DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

votes

1.8k

views

dexseq alternative splicing exon skipping

updated 9.1 years ago by Simon Anders ★ 3.7k • written 9.1 years ago by ebadr • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Votes

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Awards • All

Popular Question to James W. MacDonald 65k

Scholar to Michael Love 41k

Supporter to JKim • 0