Bioconductor BAMBU

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txdb bambu

updated 18 months ago by andre_sim ▴ 20 • written 18 months ago by camilia.savitri • 0

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bambu

updated 2.1 years ago by Jonathan Göke ▴ 60 • written 2.1 years ago by Sheetal • 0

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BAMBU bambu

updated 2.1 years ago by Sheetal • 0 • written 2.3 years ago by Seongwoo Han ▴ 10

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BAMBU bambu

updated 2.3 years ago by Andre ▴ 20 • written 2.3 years ago by Seongwoo Han ▴ 10

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BAMBU bambu

2.3 years ago Seongwoo Han ▴ 10

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

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Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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