Bioconductor BSgenome forge

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bsgenome forge twobits_export bioconductor

6.5 years ago bioinagesh • 0

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bsgenome forge TwoBits_export

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by stu111538 • 0

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bsgenome bsgenome forge

9.1 years ago • updated 8.6 years ago jodiera • 0

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bsgenome forge

9.6 years ago pj dias ▴ 60

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crisprseek grna searching bsgenome forge offtarget analysis

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by rajewski23 • 0

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BSgenome forge 2bit bsgnome forge 2bit file

updated 11.0 years ago by Hervé Pagès 16k • written 11.0 years ago by mbk0asis • 0

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bsgenome forge bovine

updated 11.0 years ago by Hervé Pagès 16k • written 11.0 years ago by mbk0asis • 0

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Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

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Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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