Bioconductor BSgenome.Hsapiens.UCSC.hg38

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 16 months ago by ATpoint ★ 4.5k • written 16 months ago by Lillian • 0

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HiCDCPlus BSgenome.Hsapiens.UCSC.hg38

updated 17 months ago by merve.sahn • 0 • written 23 months ago by Yue • 0

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BSgenome.Hsapiens.UCSC.hg38 BSgenome.Hsapiens.UCSC.hg38.masked

2.5 years ago Bogdan ▴ 670

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org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38

3.8 years ago Konstantinos Yeles ▴ 80

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BSgenome.Hsapiens.UCSC.hg38

updated 3.8 years ago by ahorn720 ▴ 10 • written 3.8 years ago by rohitsatyam102 ▴ 20

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.7 years ago by kayla.interdonato ▴ 160 • written 4.7 years ago by jam526 • 0

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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