Showing : hg38 • reset
0
votes
1
reply
431
views
Is SeqSQC compatible with hg38?
SeqSQC hg38
updated 10 months ago by 66k • written 10 months ago by • 0
0
votes
1
reply
772
views
Genic annotations of whole hg38
hg38 genicannotations
updated 2.8 years ago by 66k • written 2.8 years ago by • 0
6
votes
3
replies
1.2k
views
Annotating all SNVs in a genomic area, based on HG38 coordinates
Annotation variation HG38
updated 3.7 years ago by 66k • written 3.7 years ago by • 0
2
votes
4
replies
1.1k
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 4.5 years ago by ▴ 160 • written 4.5 years ago by • 0
2
votes
5
replies
2.5k
views
getGeneLengthAndGCContent: "zero or more than one input sequence"
edaseq normalization hg38 biomart org.db
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by • 0
0
votes
2
replies
1.6k
views
problem running featurecounts using hg38 in-built annotation
featurecounts hg38
7.2 years ago raf4 ▴ 20
2
votes
7
replies
2.8k
views
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv
updated 7.4 years ago by 42k • written 7.4 years ago by • 0
0
votes
4
replies
2.3k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 7.7 years ago by ★ 3.6k • written 7.7 years ago by • 0
1
vote
1
reply
2.2k
views
package ‘BSgenome.Hsapiens.UCSC.hg38’ is not available (for R version 3.1.2)
bsgenome hg38 r version 3.1.2
updated 8.9 years ago by 66k • written 8.9 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 730
Popular Question to maltethodberg ▴ 180
Scholar to Michael Love 42k
Popular Question to Leonardo Collado Torres ★ 1.1k
Scholar to Gordon Smyth 51k
Locations • All
France, 16 minutes ago
WEHI, Melbourne, Australia, 19 minutes ago
Hong Kong, 1 hour ago
Ann Arbor, 3 hours ago
San Diego, 3 hours ago
Traffic: 553 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6