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BiocUpgrade
•
reset
3
votes
8
replies
26k
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"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
8
votes
4
replies
6.9k
views
Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
1
vote
4
replies
1.7k
views
Error in upgrading bioconductor
bioconductor
biocupgrade
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
laksharikrish
• 0
0
votes
2
replies
1.2k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite
biocupgrade
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
dan.gatti
• 0
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Simon Coetzee
▴ 50
0
votes
1
reply
611
views
Older version is broken. How to remove it or update it?
Logolas
old-version
BiocUpgrade
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
Kushal K Dey
▴ 10
0
votes
1
reply
1.2k
views
Upgrading bioconductor - how do I change the contrib.url?
biocinstaller
biocupgrade
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
ail27
• 0
2
votes
1
reply
1.6k
views
Update bioconductor in R 3.2.4
GenomicRanges
biocupgrade
updated 8.0 years ago by
Dan Tenenbaum
★ 8.2k • written 8.0 years ago by
Vinicius Henrique da Silva
▴ 40
8 results • Page
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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