Bioconductor Bowtie

Showing : Bowtie • reset

2

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9

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8.2k

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deseq deseq2 edger tophat bowtie

9.7 years ago ysdel ▴ 40

1

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4

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1.8k

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r bowtie

updated 9.7 years ago by Sean Davis 21k • written 9.7 years ago by a.afshinfard ▴ 10

2

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4

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1.9k

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Bowtie quasr rnaseq

updated 9.1 years ago by Dario Strbenac ★ 1.6k • written 9.1 years ago by tarek.mohamed ▴ 10

0

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1

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1.1k

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noiseq rsubread tophat bowtie bowtie2

5.7 years ago Marcelo Laia ▴ 450

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Answer: Automatically install dependencies by shepherl 4.1k

Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…

Comment: For some reason I can't update BiocManager to 3.20 by azm.ana2 • 0

Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…

Comment: For some reason I can't update BiocManager to 3.20 by azm.ana2 • 0

Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…

Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Votes

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

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