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Bowtie
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Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.1 years ago
Marcelo Laia
▴ 450
2
votes
4
replies
1.7k
views
Bowtie % mapped reads for DGE
Bowtie
quasr
rnaseq
updated 8.5 years ago by
Dario Strbenac
★ 1.5k • written 8.5 years ago by
tarek.mohamed
▴ 10
2
votes
9
replies
7.7k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq
deseq2
edger
tophat
bowtie
9.1 years ago
ysdel
▴ 40
1
vote
4
replies
1.6k
views
Importing Bowtie result into R
r
bowtie
updated 9.1 years ago by
Sean Davis
21k • written 9.1 years ago by
a.afshinfard
▴ 10
4 results • Page
1 of 1
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Answer: Validity of SingleR with very small bulk RNAseq reference
by
ATpoint
★ 4.2k
The vignette data are "large" because it is single-cell data and each cell is considered in this case a "replicate". With bulk RNA-seq you …
Answer: Plot PCA with ellipses using ggplot
by
ATpoint
★ 4.2k
This is rather a ggplot than DESeq2 question, please see for example https://stackoverflow.com/questions/49931681/error-too-few-points-to-c…
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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ATpoint
★ 4.2k
Popular Question
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Lluís Revilla Sancho
▴ 730
Popular Question
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maltethodberg
▴ 180
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Michael Love
42k
Popular Question
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Leonardo Collado Torres
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