Bioconductor Bowtie

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noiseq rsubread tophat bowtie bowtie2

6.7 years ago Marcelo Laia ▴ 450

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Bowtie quasr rnaseq

updated 10.1 years ago by Dario Strbenac ★ 1.6k • written 10.1 years ago by tarek.mohamed ▴ 10

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deseq deseq2 edger tophat bowtie

10.7 years ago ysdel ▴ 40

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r bowtie

updated 10.7 years ago by Sean Davis 21k • written 10.7 years ago by a.afshinfard ▴ 10

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Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k

Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…

Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0

Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…

Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20

Thanks both for this useful information.

Votes

Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?

Answer: Can sample-level weights be used when analysing GSVA scores in limma?

Comment: Can sample-level weights be used when analysing GSVA scores in limma?

Answer: Issue loading and downloading Bioconductor 3.22 packages after update

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