Bioconductor Tophat

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1.3k

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snpeff python tophat r RNAseq123

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by kusum • 0

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1.3k

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noiseq rsubread tophat bowtie bowtie2

6.7 years ago Marcelo Laia ▴ 450

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1.5k

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topGO tophat kolmogorov-smirnov test

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by aaronrosenstein • 0

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2.8k

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R rnaseq tophat summarizeoverlaps systempiper

updated 9.3 years ago by Thomas Girke ★ 1.7k • written 9.3 years ago by abass.conteh • 0

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9.1k

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deseq deseq2 edger tophat bowtie

10.7 years ago ysdel ▴ 40

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2.9k

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rnaseq summarizeOverlaps deseq2 tophat genomicalignments

updated 11.3 years ago by Dan Tenenbaum ★ 8.2k • written 11.3 years ago by alejandro.colaneri ▴ 20

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Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20

Thanks both for this useful information.

Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k

SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0

Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …

Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0

Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …

Answer: Issue loading and downloading Bioconductor 3.22 packages after update by James W. MacDonald 68k

As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…

Votes

Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?

Answer: Can sample-level weights be used when analysing GSVA scores in limma?

Comment: Can sample-level weights be used when analysing GSVA scores in limma?

Answer: Issue loading and downloading Bioconductor 3.22 packages after update

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