Biostar Tophat

Showing : tophat • reset

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423

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snpeff python tophat r RNAseq123

updated 18 months ago by Kevin Blighe 3.7k • written 18 months ago by kusum • 0

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495

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noiseq rsubread tophat bowtie bowtie2

3.7 years ago Marcelo Laia ▴ 450

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591

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topGO tophat kolmogorov-smirnov test

updated 5.6 years ago by James W. MacDonald 62k • written 5.6 years ago by aaronrosenstein • 0

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1.6k

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R rnaseq tophat summarizeoverlaps systempiper

updated 6.3 years ago by Thomas Girke ★ 1.7k • written 6.3 years ago by abass.conteh • 0

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6.6k

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deseq deseq2 edger tophat bowtie

7.6 years ago ysdel ▴ 40

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1.9k

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rnaseq summarizeOverlaps deseq2 tophat genomicalignments

updated 8.2 years ago by Dan Tenenbaum ★ 8.2k • written 8.2 years ago by alejandro.colaneri ▴ 20

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Comment: DESeq2 and heatmap for multiple comparisons by artem.vorobyev • 0

this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…

Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k

BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …

Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k

If you want to know what genes are different between lesion and treated, compare them to each other.

Votes

Comment: recount 3 protect read length metadata

Answer: Doubts about manipulation and annotation of microarray files deposited at GEO

C: Batch correction in DESeq2

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair

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