Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
tophat
•
reset
0
votes
1
reply
423
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 18 months ago by
Kevin Blighe
3.7k • written 18 months ago by
kusum
• 0
0
votes
1
reply
495
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
3.7 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
591
views
Filtering Tophat/cufflinks data for GSEA with topGO
topGO
tophat
kolmogorov-smirnov test
updated 5.6 years ago by
James W. MacDonald
62k • written 5.6 years ago by
aaronrosenstein
• 0
2
votes
3
replies
1.6k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 6.3 years ago by
Thomas Girke
★ 1.7k • written 6.3 years ago by
abass.conteh
• 0
2
votes
9
replies
6.6k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq
deseq2
edger
tophat
bowtie
7.6 years ago
ysdel
▴ 40
0
votes
3
replies
1.9k
views
Error when counting reads in genes with summarizeOverlaps (Genomic-Aligments package)
rnaseq
summarizeOverlaps
deseq2
tophat
genomicalignments
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
alejandro.colaneri
▴ 20
6 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
• 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Awards
• All
Popular Question
to
Chris
• 0
Popular Question
to
Malcolm Cook
★ 1.6k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Hans-Ulrich Klein
▴ 330
Popular Question
to
JoeMG
• 0
Locations
• All
Israel,
just now
EMBL Heidelberg,
1 minute ago
Netherlands,
6 minutes ago
France,
13 minutes ago
WEHI, Melbourne, Australia,
14 minutes ago
Traffic: 585 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6