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CATALYST
•
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0
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0
replies
220
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Catalyst::cluster function does NOT produce the same results when setting seed
visua
Visualization
CATALYST
4 months ago
elefth.pavlos
▴ 40
0
votes
2
replies
620
views
Invalid spillover matrix with values greater than 1
CATALYST
updated 9 months ago by
SamGG
▴ 350 • written 20 months ago by
David
• 0
2
votes
3
replies
2.1k
views
Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 11 months ago by
Hervé Pagès
16k • written 11 months ago by
Hyoann
▴ 20
0
votes
0
replies
397
views
data truncation with sce2fcs()
CATALYST
13 months ago
Shaun
• 0
2
votes
2
replies
1.1k
views
Unable to download CATALYST
CATALYST
21 months ago
David
• 0
1
vote
3
replies
1.0k
views
singlecellexperiments markers after clustering
CATALYST
SingleCellExperiment
updated 3.3 years ago by
helucro
▴ 70 • written 3.4 years ago by
achaillon
• 0
2
votes
2
replies
1.4k
views
Updating package CATALYST
CATALYST
cytofWorkflow
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
Brent.OCarrigan
• 0
0
votes
1
reply
971
views
Error after assignPrelim(), CyTOF compenstation
CATALYST
flowCore
assignPrelim
Error in vapply
read.FCS
5.2 years ago
j.krop
• 0
8 results • Page
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Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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