Showing : CDF • reset
1
vote
4
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3.6k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
votes
9
replies
3.1k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 12.0 years ago by ▴ 600 • written 12.0 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Fwd: GWASTools
cdf convert GWASTools cdf convert GWASTools
12.1 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
3.2k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ▴ 10
0
votes
1
reply
3.2k
views
Analysis of Human Gene 1.1 ST Array
Microarray cdf affy PROcess oligo xps Microarray cdf affy PROcess oligo xps
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 190
0
votes
0
replies
1.4k
views
Human Gene 1.1 st array
cdf cdf
12.2 years ago Jerry Cholo ▴ 190
0
votes
1
reply
1.6k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 12.3 years ago by ▴ 190 • written 12.3 years ago by ▴ 100
0
votes
6
replies
2.1k
views
Installing library package (Marmoset Gene 1.0 ST Array) into R environment
cdf cdf
updated 12.3 years ago by 68k • written 12.3 years ago by ★ 13k
0
votes
1
reply
2.7k
views
affy - Anotation of Afymetrix PrimeView chipe
cdf probe affy limma cdf probe affy limma
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 10
1
vote
1
reply
2.2k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 80
0
votes
0
replies
2.2k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
12.3 years ago Stephanie M. Gogarten ▴ 890
0
votes
0
replies
2.0k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
12.3 years ago b a ▴ 40
0
votes
0
replies
1.4k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
12.3 years ago b a ▴ 40
0
votes
3
replies
1.6k
views
xps library with mouse gene 1.0 transcript arrays
Annotation cdf xps Annotation cdf xps
updated 12.4 years ago by ★ 3.9k • written 12.4 years ago by ★ 1.5k
0
votes
5
replies
3.1k
views
GSVA questions
cdf GSVA cdf GSVA
12.4 years ago Guest User ★ 13k
0
votes
1
reply
2.6k
views
GWASTools
cdf GWASTools cdf GWASTools
12.5 years ago Stephanie M. Gogarten ▴ 890
0
votes
5
replies
2.3k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.5 years ago Alan Smith ▴ 150
0
votes
0
replies
1.5k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.5 years ago Wei Shi ★ 3.6k
0
votes
0
replies
1.5k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.5 years ago Wei Shi ★ 3.6k
0
votes
1
reply
840
views
cdf redesign
cdf convert cdf convert
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 30
0
votes
1
reply
651
views
Prolems with AraGene 1_1 annotation
Annotation GO cdf probe Annotation GO cdf probe
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 10
0
votes
0
replies
886
views
Updated affy package? ReadAffy/ AffyBatch has change and breaks my pipeline!
cdf affy cdf affy
12.6 years ago elliot harrison ▴ 230
0
votes
0
replies
1.0k
views
an error in is CDFXDA
cdf cdf
12.6 years ago James W. MacDonald 68k
0
votes
1
reply
1.8k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.6 years ago by ▴ 890 • written 12.6 years ago by ▴ 60
0
votes
1
reply
2.1k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 90
0
votes
1
reply
539
views
RJpGene.1.0 and RCnGene.1.0 .CDF files
cdf affy cdf affy
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
5
replies
2.2k
views
ERCC spike-in probes in
Microarray Normalization cdf affy Microarray Normalization cdf affy
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
2
replies
1.4k
views
error in makeVectorsAffyBatch of frmaTools package
cdf frmaTools cdf frmaTools
updated 12.6 years ago by ▴ 830 • written 12.6 years ago by ▴ 100
2
votes
4
replies
3.3k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 140
0
votes
2
replies
1.4k
views
Rat St gene array 2.0
Cancer cdf Cancer cdf
updated 12.6 years ago by ▴ 10 • written 12.6 years ago by ▴ 170
0
votes
1
reply
849
views
could not find function "makeProbePackage"
cdf probe cdf probe
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 10
0
votes
5
replies
2.4k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.7 years ago by ▴ 60 • written 12.7 years ago by ▴ 890
0
votes
3
replies
2.0k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 12.7 years ago by ▴ 60 • written 12.7 years ago by ▴ 890
0
votes
1
reply
750
views
custon Cdf file
cdf cdf
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 170
0
votes
4
replies
1.9k
views
Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 170
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.7 years ago by ★ 7.2k • written 12.7 years ago by ▴ 50
0
votes
3
replies
1.3k
views
Affymetrix US Rice Gene Strip 1.1
cdf cdf
updated 12.7 years ago by 68k • written 12.7 years ago by ★ 13k
0
votes
4
replies
1.8k
views
error using frma() with brainarray CDFs
cdf affy cdf affy
updated 12.8 years ago by ▴ 830 • written 12.8 years ago by ▴ 100
0
votes
2
replies
1.2k
views
mogene20stcdf
cdf cdf
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 80
0
votes
3
replies
3.2k
views
Affymetrix CEL files
cdf GWASTools cdf GWASTools
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 890
0
votes
2
replies
2.2k
views
Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 10
0
votes
0
replies
1.2k
views
GWATools use in creating ncdf files
cdf GWASTools cdf GWASTools
12.8 years ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
1.6k
views
Microarray Analysis of Rat Gene 2.0 ST arrays
Microarray cdf Microarray cdf
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
0
votes
3
replies
1.2k
views
Make cdf package error Human Exon array
cdf cdf
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
0
votes
6
replies
2.2k
views
barcode with custom CDF
cdf frma frmaTools cdf frma frmaTools
updated 12.8 years ago by ▴ 600 • written 12.9 years ago by ★ 13k
0
votes
0
replies
1.5k
views
A question about GWASTools package
cdf GWASTools cdf GWASTools
12.9 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.9k
views
GWASTools for analyzing Canine_HD genotyping data
Organism cdf GWASTools Organism cdf GWASTools
12.9 years ago Stephanie M. Gogarten ▴ 890
0
votes
0
replies
1.7k
views
How can I use the information from an ADF [Array Design File] file for microarray normalization?
Normalization cdf PROcess convert Normalization cdf PROcess convert
12.9 years ago Christoph Geisenberger ▴ 10
0
votes
3
replies
1.8k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.9 years ago by ★ 6.5k • written 12.9 years ago by ★ 13k
0
votes
2
replies
1.5k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 50
927 results • Page 2 of 19
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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