Showing : CDF • reset
1
vote
4
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3.5k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
0
votes
9
replies
3.0k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 11.8 years ago by ▴ 600 • written 11.8 years ago by ▴ 100
0
votes
0
replies
1.5k
views
Fwd: GWASTools
cdf convert GWASTools cdf convert GWASTools
11.8 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
3.1k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 11.9 years ago by ★ 3.9k • written 11.9 years ago by ▴ 10
0
votes
1
reply
3.1k
views
Analysis of Human Gene 1.1 ST Array
Microarray cdf affy PROcess oligo xps Microarray cdf affy PROcess oligo xps
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 190
0
votes
0
replies
1.4k
views
Human Gene 1.1 st array
cdf cdf
12.0 years ago Jerry Cholo ▴ 190
0
votes
1
reply
1.6k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 12.0 years ago by ▴ 190 • written 12.0 years ago by ▴ 100
0
votes
6
replies
2.0k
views
Installing library package (Marmoset Gene 1.0 ST Array) into R environment
cdf cdf
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
votes
1
reply
2.6k
views
affy - Anotation of Afymetrix PrimeView chipe
cdf probe affy limma cdf probe affy limma
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 10
1
vote
1
reply
2.1k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 80
0
votes
0
replies
2.2k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
12.1 years ago Stephanie M. Gogarten ▴ 890
0
votes
0
replies
1.9k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
12.1 years ago b a ▴ 40
0
votes
0
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1.3k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
12.1 years ago b a ▴ 40
0
votes
3
replies
1.6k
views
xps library with mouse gene 1.0 transcript arrays
Annotation cdf xps Annotation cdf xps
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ★ 1.5k
0
votes
5
replies
3.1k
views
GSVA questions
cdf GSVA cdf GSVA
12.2 years ago Guest User ★ 13k
0
votes
1
reply
2.6k
views
GWASTools
cdf GWASTools cdf GWASTools
12.2 years ago Stephanie M. Gogarten ▴ 890
0
votes
5
replies
2.2k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.3 years ago Alan Smith ▴ 150
0
votes
0
replies
1.4k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.3 years ago Wei Shi ★ 3.6k
0
votes
0
replies
1.5k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.3 years ago Wei Shi ★ 3.6k
0
votes
1
reply
802
views
cdf redesign
cdf convert cdf convert
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 30
0
votes
1
reply
627
views
Prolems with AraGene 1_1 annotation
Annotation GO cdf probe Annotation GO cdf probe
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 10
0
votes
0
replies
846
views
Updated affy package? ReadAffy/ AffyBatch has change and breaks my pipeline!
cdf affy cdf affy
12.3 years ago elliot harrison ▴ 230
0
votes
0
replies
1.0k
views
an error in is CDFXDA
cdf cdf
12.3 years ago James W. MacDonald 68k
0
votes
1
reply
1.7k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.3 years ago by ▴ 890 • written 12.3 years ago by ▴ 60
0
votes
1
reply
2.0k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 90
0
votes
1
reply
513
views
RJpGene.1.0 and RCnGene.1.0 .CDF files
cdf affy cdf affy
updated 12.3 years ago by 68k • written 12.3 years ago by ★ 13k
0
votes
5
replies
2.1k
views
ERCC spike-in probes in
Microarray Normalization cdf affy Microarray Normalization cdf affy
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
2
replies
1.4k
views
error in makeVectorsAffyBatch of frmaTools package
cdf frmaTools cdf frmaTools
updated 12.4 years ago by ▴ 830 • written 12.4 years ago by ▴ 100
2
votes
4
replies
3.2k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.4 years ago by ★ 3.9k • written 12.4 years ago by ▴ 140
0
votes
2
replies
1.3k
views
Rat St gene array 2.0
Cancer cdf Cancer cdf
updated 12.4 years ago by ▴ 10 • written 12.4 years ago by ▴ 170
0
votes
1
reply
826
views
could not find function "makeProbePackage"
cdf probe cdf probe
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 10
0
votes
5
replies
2.3k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 890
0
votes
3
replies
1.9k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 890
0
votes
1
reply
721
views
custon Cdf file
cdf cdf
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 170
0
votes
4
replies
1.8k
views
Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 170
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 50
0
votes
3
replies
1.2k
views
Affymetrix US Rice Gene Strip 1.1
cdf cdf
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
4
replies
1.8k
views
error using frma() with brainarray CDFs
cdf affy cdf affy
updated 12.5 years ago by ▴ 830 • written 12.5 years ago by ▴ 100
0
votes
2
replies
1.2k
views
mogene20stcdf
cdf cdf
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 80
0
votes
3
replies
3.1k
views
Affymetrix CEL files
cdf GWASTools cdf GWASTools
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 890
0
votes
2
replies
2.1k
views
Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 10
0
votes
0
replies
1.1k
views
GWATools use in creating ncdf files
cdf GWASTools cdf GWASTools
12.5 years ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
1.5k
views
Microarray Analysis of Rat Gene 2.0 ST arrays
Microarray cdf Microarray cdf
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
3
replies
1.2k
views
Make cdf package error Human Exon array
cdf cdf
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
6
replies
2.1k
views
barcode with custom CDF
cdf frma frmaTools cdf frma frmaTools
updated 12.6 years ago by ▴ 600 • written 12.6 years ago by ★ 13k
0
votes
0
replies
1.4k
views
A question about GWASTools package
cdf GWASTools cdf GWASTools
12.6 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.8k
views
GWASTools for analyzing Canine_HD genotyping data
Organism cdf GWASTools Organism cdf GWASTools
12.7 years ago Stephanie M. Gogarten ▴ 890
0
votes
0
replies
1.6k
views
How can I use the information from an ADF [Array Design File] file for microarray normalization?
Normalization cdf PROcess convert Normalization cdf PROcess convert
12.7 years ago Christoph Geisenberger ▴ 10
0
votes
3
replies
1.7k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.7 years ago by ★ 6.5k • written 12.7 years ago by ★ 13k
0
votes
2
replies
1.4k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 50
927 results • Page 2 of 19
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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