Showing : COHCAP • reset
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Error while using COHCAP pipeline for 450k methylation data analysis
r cohcap 450k methylation
6.9 years ago sayamsmruti • 0
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2.1k
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COHCAP Perl error while running commands
cohcap Perl
8.9 years ago poojitha.stemcell ▴ 10
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1.4k
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Correlating DNA methylation and Illumina gene expression microarray data
microarray HM450 dna methylation cohcap
updated 9.0 years ago by 68k • written 9.0 years ago by ▴ 10
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
9.0 years ago IOM ▴ 20
4 results • Page 1 of 1
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Answer: Guitar R package requires update due to dependency GenomicFeatures by Kevin Blighe ★ 4.0k
Greetings, This issue is indeed caused by recent changes in the Bioconductor 3.20+ release cycle. The function makeTxDbFromGFF() was previ…
Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: Clarification on counting in Rsubread (featureCounts) by Kevin Blighe ★ 4.0k
Dear Luca, This is a very plausible behavior caused by **read assignment ambiguity** due to **overlapping gene coordinates** (specifical…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
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